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Cluster: HRGMv2_4412_CGC22

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_4412_59 HRGMv2_4412_59_1 443 1720 - 9.A.40.2.4
pfam HRGMv2_4412_59 HRGMv2_4412_59_2 2062 3864 - PEPCK_GTP | PEPCK_N
TF HRGMv2_4412_59 HRGMv2_4412_59_3 4483 5361 + HTH_6
CAZyme HRGMv2_4412_59 HRGMv2_4412_59_4 5571 6407 + GT2
pfam HRGMv2_4412_59 HRGMv2_4412_59_5 6420 7595 + Glyphos_transf
pfam HRGMv2_4412_59 HRGMv2_4412_59_6 7601 7993 + CTP_transf_like
CAZyme HRGMv2_4412_59 HRGMv2_4412_59_7 8008 9285 + GT4
pfam HRGMv2_4412_59 HRGMv2_4412_59_8 9327 10895 + Wzy_C
pfam HRGMv2_4412_59 HRGMv2_4412_59_9 11205 12029 + LicD
TC HRGMv2_4412_59 HRGMv2_4412_59_10 12029 13483 + 2.A.66.2.22
Gene ID: HRGMv2_4412_59_1
Type: TC
Location: 443 - 1720 (-)
Gene ID: HRGMv2_4412_59_2
Type: pfam
Location: 2062 - 3864 (-)
Gene ID: HRGMv2_4412_59_3
Type: TF
Location: 4483 - 5361 (+)
Gene ID: HRGMv2_4412_59_4
Type: CAZyme
Location: 5571 - 6407 (+)
Gene ID: HRGMv2_4412_59_5
Type: pfam
Location: 6420 - 7595 (+)
Gene ID: HRGMv2_4412_59_6
Type: pfam
Location: 7601 - 7993 (+)
Gene ID: HRGMv2_4412_59_7
Type: CAZyme
Location: 8008 - 9285 (+)
Gene ID: HRGMv2_4412_59_8
Type: pfam
Location: 9327 - 10895 (+)
Gene ID: HRGMv2_4412_59_9
Type: pfam
Location: 11205 - 12029 (+)
Gene ID: HRGMv2_4412_59_10
Type: TC
Location: 12029 - 13483 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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