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Cluster: HRGMv2_4412_CGC18

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_4412_31 HRGMv2_4412_31_3 1842 2534 - 3.A.1.140.1
pfam HRGMv2_4412_31 HRGMv2_4412_31_4 2790 3875 - HTH_30 | GGDEF_2
pfam HRGMv2_4412_31 HRGMv2_4412_31_5 4244 5281 - DUF348 | 3D | G5
CAZyme HRGMv2_4412_31 HRGMv2_4412_31_6 5917 8952 + GH2
TC HRGMv2_4412_31 HRGMv2_4412_31_7 9047 10471 - 9.A.11.1.1
NULL(UNKNOWN) HRGMv2_4412_31 HRGMv2_4412_31_8 10585 11547 - NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_4412_31 HRGMv2_4412_31_9 11607 13097 - GH51_1
peptidase HRGMv2_4412_31 HRGMv2_4412_31_10 13195 14340 - M38.UNW
NULL(UNKNOWN) HRGMv2_4412_31 HRGMv2_4412_31_11 14361 14525 - NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_4412_31 HRGMv2_4412_31_12 14867 16381 + GH77
Gene ID: HRGMv2_4412_31_3
Type: TC
Location: 1842 - 2534 (-)
Gene ID: HRGMv2_4412_31_4
Type: pfam
Location: 2790 - 3875 (-)
Gene ID: HRGMv2_4412_31_5
Type: pfam
Location: 4244 - 5281 (-)
Gene ID: HRGMv2_4412_31_6
Type: CAZyme
Location: 5917 - 8952 (+)
Gene ID: HRGMv2_4412_31_7
Type: TC
Location: 9047 - 10471 (-)
Gene ID: HRGMv2_4412_31_8
Type:
Location: 10585 - 11547 (-)
Gene ID: HRGMv2_4412_31_9
Type: CAZyme
Location: 11607 - 13097 (-)
Gene ID: HRGMv2_4412_31_10
Type: peptidase
Location: 13195 - 14340 (-)
Gene ID: HRGMv2_4412_31_11
Type:
Location: 14361 - 14525 (-)
Gene ID: HRGMv2_4412_31_12
Type: CAZyme
Location: 14867 - 16381 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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