Cluster: HRGMv2_4365_CGC1
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_4365
- CGC Family ID: CGCFAM_03356
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_4365_34 | HRGMv2_4365_34_8 | 6613 | 7818 | + | 2.A.1.46.5 |
| pfam | HRGMv2_4365_34 | HRGMv2_4365_34_9 | 7799 | 8752 | - | 3Beta_HSD | Epimerase | NAD_binding_4 | GDP_Man_Dehyd |
| pfam | HRGMv2_4365_34 | HRGMv2_4365_34_10 | 8743 | 9486 | - | NTP_transferase | NTP_transf_3 |
| CAZyme | HRGMv2_4365_34 | HRGMv2_4365_34_11 | 9483 | 13376 | - | GT2 |
| NULL(UNKNOWN) | HRGMv2_4365_34 | HRGMv2_4365_34_12 | 13373 | 14161 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_4365_34 | HRGMv2_4365_34_13 | 14143 | 15750 | - | GT2 |
Gene ID: HRGMv2_4365_34_8
Type: TC
Location: 6613 - 7818 (+)
Type: TC
Location: 6613 - 7818 (+)
Gene ID: HRGMv2_4365_34_9
Type: pfam
Location: 7799 - 8752 (-)
Type: pfam
Location: 7799 - 8752 (-)
Gene ID: HRGMv2_4365_34_10
Type: pfam
Location: 8743 - 9486 (-)
Type: pfam
Location: 8743 - 9486 (-)
Gene ID: HRGMv2_4365_34_11
Type: CAZyme
Location: 9483 - 13376 (-)
Type: CAZyme
Location: 9483 - 13376 (-)
Gene ID: HRGMv2_4365_34_12
Type:
Location: 13373 - 14161 (-)
Type:
Location: 13373 - 14161 (-)
Gene ID: HRGMv2_4365_34_13
Type: CAZyme
Location: 14143 - 15750 (-)
Type: CAZyme
Location: 14143 - 15750 (-)
Taxonomic Lineage
Domain
Archaea
Phylum
Thermoplasmatota
Class
Thermoplasmata
Order
Methanomassiliicoccales
Family
Methanomethylophilaceae
Genus
UBA71
Species
UBA71 sp949295765
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.