Cluster: HRGMv2_4358_CGC42
🧬 Cluster Details
- Gene Count: 11
- CAZyme Count: 4
- Substrate:
- Genome ID: HRGMv2_4358
- CGC Family ID: CGCFAM_02078
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_4358_13 | HRGMv2_4358_13_52 | 52604 | 53266 | - | 9.B.28.3.1 |
| TC | HRGMv2_4358_13 | HRGMv2_4358_13_53 | 53301 | 54152 | - | 3.A.1.1.36 |
| TC | HRGMv2_4358_13 | HRGMv2_4358_13_54 | 54164 | 55060 | - | 3.A.1.1.11 |
| STP | HRGMv2_4358_13 | HRGMv2_4358_13_55 | 55164 | 56441 | - | SBP_bac_1 |
| CAZyme | HRGMv2_4358_13 | HRGMv2_4358_13_56 | 56478 | 57611 | - | GH88 |
| CAZyme | HRGMv2_4358_13 | HRGMv2_4358_13_57 | 57599 | 59413 | - | GH154 |
| NULL(UNKNOWN) | HRGMv2_4358_13 | HRGMv2_4358_13_58 | 59418 | 59759 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TF | HRGMv2_4358_13 | HRGMv2_4358_13_59 | 59965 | 61044 | + | LacI |
| CAZyme | HRGMv2_4358_13 | HRGMv2_4358_13_60 | 61205 | 62878 | - | PL33_2 |
| NULL(UNKNOWN) | HRGMv2_4358_13 | HRGMv2_4358_13_61 | 62881 | 63729 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_4358_13 | HRGMv2_4358_13_62 | 63900 | 65906 | - | GH42 |
Gene ID: HRGMv2_4358_13_52
Type: TC
Location: 52604 - 53266 (-)
Type: TC
Location: 52604 - 53266 (-)
Gene ID: HRGMv2_4358_13_53
Type: TC
Location: 53301 - 54152 (-)
Type: TC
Location: 53301 - 54152 (-)
Gene ID: HRGMv2_4358_13_54
Type: TC
Location: 54164 - 55060 (-)
Type: TC
Location: 54164 - 55060 (-)
Gene ID: HRGMv2_4358_13_55
Type: STP
Location: 55164 - 56441 (-)
Type: STP
Location: 55164 - 56441 (-)
Gene ID: HRGMv2_4358_13_56
Type: CAZyme
Location: 56478 - 57611 (-)
Type: CAZyme
Location: 56478 - 57611 (-)
Gene ID: HRGMv2_4358_13_57
Type: CAZyme
Location: 57599 - 59413 (-)
Type: CAZyme
Location: 57599 - 59413 (-)
Gene ID: HRGMv2_4358_13_58
Type:
Location: 59418 - 59759 (-)
Type:
Location: 59418 - 59759 (-)
Gene ID: HRGMv2_4358_13_59
Type: TF
Location: 59965 - 61044 (+)
Type: TF
Location: 59965 - 61044 (+)
Gene ID: HRGMv2_4358_13_60
Type: CAZyme
Location: 61205 - 62878 (-)
Type: CAZyme
Location: 61205 - 62878 (-)
Gene ID: HRGMv2_4358_13_61
Type:
Location: 62881 - 63729 (-)
Type:
Location: 62881 - 63729 (-)
Gene ID: HRGMv2_4358_13_62
Type: CAZyme
Location: 63900 - 65906 (-)
Type: CAZyme
Location: 63900 - 65906 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota
Class
Bacilli
Order
Lactobacillales
Family
Enterococcaceae
Genus
Enterococcus_B
Species
Enterococcus_B thailandicus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.