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Cluster: HRGMv2_4358_CGC18

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_4358_3 HRGMv2_4358_3_26 29889 31316 + GH1
CAZyme HRGMv2_4358_3 HRGMv2_4358_3_27 31333 33450 + GH3
TF HRGMv2_4358_3 HRGMv2_4358_3_28 33625 34644 + LacI
TC HRGMv2_4358_3 HRGMv2_4358_3_29 34687 35631 + 3.A.1.1.29
TC HRGMv2_4358_3 HRGMv2_4358_3_30 35648 36562 + 3.A.1.1.29
NULL(UNKNOWN) HRGMv2_4358_3 HRGMv2_4358_3_31 36575 38218 + NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_4358_3 HRGMv2_4358_3_32 38534 39160 + 9.B.28.1.8
pfam HRGMv2_4358_3 HRGMv2_4358_3_33 39165 40097 + ROK
STP HRGMv2_4358_3 HRGMv2_4358_3_34 40321 41592 + EPSP_synthase
TC HRGMv2_4358_3 HRGMv2_4358_3_35 41589 42884 + 3.A.6.1.1
pfam HRGMv2_4358_3 HRGMv2_4358_3_36 42983 43246 + Ribosomal_L31
CAZyme HRGMv2_4358_3 HRGMv2_4358_3_37 43496 46339 + CBM32 | GH85
Gene ID: HRGMv2_4358_3_26
Type: CAZyme
Location: 29889 - 31316 (+)
Gene ID: HRGMv2_4358_3_27
Type: CAZyme
Location: 31333 - 33450 (+)
Gene ID: HRGMv2_4358_3_28
Type: TF
Location: 33625 - 34644 (+)
Gene ID: HRGMv2_4358_3_29
Type: TC
Location: 34687 - 35631 (+)
Gene ID: HRGMv2_4358_3_30
Type: TC
Location: 35648 - 36562 (+)
Gene ID: HRGMv2_4358_3_31
Type:
Location: 36575 - 38218 (+)
Gene ID: HRGMv2_4358_3_32
Type: TC
Location: 38534 - 39160 (+)
Gene ID: HRGMv2_4358_3_33
Type: pfam
Location: 39165 - 40097 (+)
Gene ID: HRGMv2_4358_3_34
Type: STP
Location: 40321 - 41592 (+)
Gene ID: HRGMv2_4358_3_35
Type: TC
Location: 41589 - 42884 (+)
Gene ID: HRGMv2_4358_3_36
Type: pfam
Location: 42983 - 43246 (+)
Gene ID: HRGMv2_4358_3_37
Type: CAZyme
Location: 43496 - 46339 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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