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Cluster: HRGMv2_4356_CGC8

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_4356_18 HRGMv2_4356_18_6 6627 7172 + 3.A.7.19.1
TF HRGMv2_4356_18 HRGMv2_4356_18_7 7363 8373 + LacI
TC HRGMv2_4356_18 HRGMv2_4356_18_8 8529 9839 + 3.A.1.1.20
TC HRGMv2_4356_18 HRGMv2_4356_18_9 9902 10780 + 3.A.1.1.20
TC HRGMv2_4356_18 HRGMv2_4356_18_10 10782 11627 + 3.A.1.1.20
CAZyme HRGMv2_4356_18 HRGMv2_4356_18_11 11643 13124 + GH32
pfam HRGMv2_4356_18 HRGMv2_4356_18_12 13356 13637 + DUF6110
TC HRGMv2_4356_18 HRGMv2_4356_18_13 13639 15726 + 3.A.3.32.3
Gene ID: HRGMv2_4356_18_6
Type: TC
Location: 6627 - 7172 (+)
Gene ID: HRGMv2_4356_18_7
Type: TF
Location: 7363 - 8373 (+)
Gene ID: HRGMv2_4356_18_8
Type: TC
Location: 8529 - 9839 (+)
Gene ID: HRGMv2_4356_18_9
Type: TC
Location: 9902 - 10780 (+)
Gene ID: HRGMv2_4356_18_10
Type: TC
Location: 10782 - 11627 (+)
Gene ID: HRGMv2_4356_18_11
Type: CAZyme
Location: 11643 - 13124 (+)
Gene ID: HRGMv2_4356_18_12
Type: pfam
Location: 13356 - 13637 (+)
Gene ID: HRGMv2_4356_18_13
Type: TC
Location: 13639 - 15726 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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