Cluster: HRGMv2_4356_CGC4
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_4356
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_4356_11 | HRGMv2_4356_11_1 | 352 | 3024 | - | 3.A.3.2.28 |
| STP | HRGMv2_4356_11 | HRGMv2_4356_11_2 | 3355 | 3765 | + | NUDIX |
| TF | HRGMv2_4356_11 | HRGMv2_4356_11_3 | 3815 | 4477 | - | 0045030 |
| CAZyme | HRGMv2_4356_11 | HRGMv2_4356_11_4 | 4789 | 5817 | - | GH170 |
| TC | HRGMv2_4356_11 | HRGMv2_4356_11_5 | 5814 | 7235 | - | 4.A.1.2.7 |
| STP | HRGMv2_4356_11 | HRGMv2_4356_11_6 | 7232 | 8173 | - | SIS |
| TC | HRGMv2_4356_11 | HRGMv2_4356_11_7 | 8346 | 9194 | - | 9.A.25.1.1 |
Gene ID: HRGMv2_4356_11_1
Type: TC
Location: 352 - 3024 (-)
Type: TC
Location: 352 - 3024 (-)
Gene ID: HRGMv2_4356_11_2
Type: STP
Location: 3355 - 3765 (+)
Type: STP
Location: 3355 - 3765 (+)
Gene ID: HRGMv2_4356_11_3
Type: TF
Location: 3815 - 4477 (-)
Type: TF
Location: 3815 - 4477 (-)
Gene ID: HRGMv2_4356_11_4
Type: CAZyme
Location: 4789 - 5817 (-)
Type: CAZyme
Location: 4789 - 5817 (-)
Gene ID: HRGMv2_4356_11_5
Type: TC
Location: 5814 - 7235 (-)
Type: TC
Location: 5814 - 7235 (-)
Gene ID: HRGMv2_4356_11_6
Type: STP
Location: 7232 - 8173 (-)
Type: STP
Location: 7232 - 8173 (-)
Gene ID: HRGMv2_4356_11_7
Type: TC
Location: 8346 - 9194 (-)
Type: TC
Location: 8346 - 9194 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota
Class
Bacilli
Order
Lactobacillales
Family
Aerococcaceae
Genus
Abiotrophia
Species
Abiotrophia defectiva
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.