Cluster: HRGMv2_4356_CGC3
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 3
- Substrate:
- Genome ID: HRGMv2_4356
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_4356_6 | HRGMv2_4356_6_1 | 3 | 878 | + | 3.A.1.1.47 |
| TC | HRGMv2_4356_6 | HRGMv2_4356_6_2 | 880 | 1710 | + | 3.A.1.1.47 |
| CAZyme | HRGMv2_4356_6 | HRGMv2_4356_6_3 | 1780 | 3090 | + | GH29 |
| pfam | HRGMv2_4356_6 | HRGMv2_4356_6_4 | 3251 | 4081 | + | Lactamase_B | Lactamase_B_2 |
| CAZyme | HRGMv2_4356_6 | HRGMv2_4356_6_5 | 4281 | 8846 | + | GH85 |
| CAZyme | HRGMv2_4356_6 | HRGMv2_4356_6_6 | 9002 | 12040 | + | GH2 |
Gene ID: HRGMv2_4356_6_1
Type: TC
Location: 3 - 878 (+)
Type: TC
Location: 3 - 878 (+)
Gene ID: HRGMv2_4356_6_2
Type: TC
Location: 880 - 1710 (+)
Type: TC
Location: 880 - 1710 (+)
Gene ID: HRGMv2_4356_6_3
Type: CAZyme
Location: 1780 - 3090 (+)
Type: CAZyme
Location: 1780 - 3090 (+)
Gene ID: HRGMv2_4356_6_4
Type: pfam
Location: 3251 - 4081 (+)
Type: pfam
Location: 3251 - 4081 (+)
Gene ID: HRGMv2_4356_6_5
Type: CAZyme
Location: 4281 - 8846 (+)
Type: CAZyme
Location: 4281 - 8846 (+)
Gene ID: HRGMv2_4356_6_6
Type: CAZyme
Location: 9002 - 12040 (+)
Type: CAZyme
Location: 9002 - 12040 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota
Class
Bacilli
Order
Lactobacillales
Family
Aerococcaceae
Genus
Abiotrophia
Species
Abiotrophia defectiva
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.