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Cluster: HRGMv2_4356_CGC15

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_4356_34 HRGMv2_4356_34_3 978 2834 - 9.B.18.2.1
TF HRGMv2_4356_34 HRGMv2_4356_34_4 2988 4469 - HTH_AraC | HTH_AraC
TC HRGMv2_4356_34 HRGMv2_4356_34_5 4427 6157 - 8.A.59.2.1
pfam HRGMv2_4356_34 HRGMv2_4356_34_6 6126 6755 - DUF624
CAZyme HRGMv2_4356_34 HRGMv2_4356_34_7 6745 9027 - GH92
pfam HRGMv2_4356_34 HRGMv2_4356_34_8 9176 10630 - DUF3502 | SBP_bac_8
TC HRGMv2_4356_34 HRGMv2_4356_34_9 10690 11610 - 3.A.1.1.29
TC HRGMv2_4356_34 HRGMv2_4356_34_10 11622 12578 - 3.A.1.1.29
pfam HRGMv2_4356_34 HRGMv2_4356_34_11 12885 13736 - ROK
CAZyme HRGMv2_4356_34 HRGMv2_4356_34_12 13733 15142 - GH1
Gene ID: HRGMv2_4356_34_3
Type: TC
Location: 978 - 2834 (-)
Gene ID: HRGMv2_4356_34_4
Type: TF
Location: 2988 - 4469 (-)
Gene ID: HRGMv2_4356_34_5
Type: TC
Location: 4427 - 6157 (-)
Gene ID: HRGMv2_4356_34_6
Type: pfam
Location: 6126 - 6755 (-)
Gene ID: HRGMv2_4356_34_7
Type: CAZyme
Location: 6745 - 9027 (-)
Gene ID: HRGMv2_4356_34_8
Type: pfam
Location: 9176 - 10630 (-)
Gene ID: HRGMv2_4356_34_9
Type: TC
Location: 10690 - 11610 (-)
Gene ID: HRGMv2_4356_34_10
Type: TC
Location: 11622 - 12578 (-)
Gene ID: HRGMv2_4356_34_11
Type: pfam
Location: 12885 - 13736 (-)
Gene ID: HRGMv2_4356_34_12
Type: CAZyme
Location: 13733 - 15142 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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