Cluster: HRGMv2_4356_CGC12
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 5
- Substrate:
- Genome ID: HRGMv2_4356
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_4356_27 | HRGMv2_4356_27_1 | 447 | 4199 | + | CBM41 | CBM41 | GH13_12 |
| pfam | HRGMv2_4356_27 | HRGMv2_4356_27_2 | 4605 | 5348 | + | CpsB_CapC |
| TC | HRGMv2_4356_27 | HRGMv2_4356_27_3 | 5338 | 6027 | + | 8.A.3.2.3 |
| TC | HRGMv2_4356_27 | HRGMv2_4356_27_4 | 6043 | 6750 | + | 8.A.3.2.3 |
| CAZyme | HRGMv2_4356_27 | HRGMv2_4356_27_5 | 6821 | 7768 | + | GT8 |
| pfam | HRGMv2_4356_27 | HRGMv2_4356_27_6 | 7784 | 8494 | + | CDP-OH_P_transf |
| CAZyme | HRGMv2_4356_27 | HRGMv2_4356_27_7 | 8504 | 9595 | + | GT4 |
| CAZyme | HRGMv2_4356_27 | HRGMv2_4356_27_8 | 9597 | 10589 | + | GT2 |
| pfam | HRGMv2_4356_27 | HRGMv2_4356_27_9 | 10611 | 11594 | + | Caps_synth |
| CAZyme | HRGMv2_4356_27 | HRGMv2_4356_27_10 | 11611 | 12573 | + | GT2 |
| pfam | HRGMv2_4356_27 | HRGMv2_4356_27_11 | 12591 | 13793 | + | Wzy_C |
| pfam | HRGMv2_4356_27 | HRGMv2_4356_27_12 | 13803 | 14876 | + | Acyl_transf_3 |
| TC | HRGMv2_4356_27 | HRGMv2_4356_27_13 | 14903 | 16363 | + | 2.A.66.2.1 |
Gene ID: HRGMv2_4356_27_1
Type: CAZyme
Location: 447 - 4199 (+)
Type: CAZyme
Location: 447 - 4199 (+)
Gene ID: HRGMv2_4356_27_2
Type: pfam
Location: 4605 - 5348 (+)
Type: pfam
Location: 4605 - 5348 (+)
Gene ID: HRGMv2_4356_27_3
Type: TC
Location: 5338 - 6027 (+)
Type: TC
Location: 5338 - 6027 (+)
Gene ID: HRGMv2_4356_27_4
Type: TC
Location: 6043 - 6750 (+)
Type: TC
Location: 6043 - 6750 (+)
Gene ID: HRGMv2_4356_27_5
Type: CAZyme
Location: 6821 - 7768 (+)
Type: CAZyme
Location: 6821 - 7768 (+)
Gene ID: HRGMv2_4356_27_6
Type: pfam
Location: 7784 - 8494 (+)
Type: pfam
Location: 7784 - 8494 (+)
Gene ID: HRGMv2_4356_27_7
Type: CAZyme
Location: 8504 - 9595 (+)
Type: CAZyme
Location: 8504 - 9595 (+)
Gene ID: HRGMv2_4356_27_8
Type: CAZyme
Location: 9597 - 10589 (+)
Type: CAZyme
Location: 9597 - 10589 (+)
Gene ID: HRGMv2_4356_27_9
Type: pfam
Location: 10611 - 11594 (+)
Type: pfam
Location: 10611 - 11594 (+)
Gene ID: HRGMv2_4356_27_10
Type: CAZyme
Location: 11611 - 12573 (+)
Type: CAZyme
Location: 11611 - 12573 (+)
Gene ID: HRGMv2_4356_27_11
Type: pfam
Location: 12591 - 13793 (+)
Type: pfam
Location: 12591 - 13793 (+)
Gene ID: HRGMv2_4356_27_12
Type: pfam
Location: 13803 - 14876 (+)
Type: pfam
Location: 13803 - 14876 (+)
Gene ID: HRGMv2_4356_27_13
Type: TC
Location: 14903 - 16363 (+)
Type: TC
Location: 14903 - 16363 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota
Class
Bacilli
Order
Lactobacillales
Family
Aerococcaceae
Genus
Abiotrophia
Species
Abiotrophia defectiva
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.