Cluster: HRGMv2_4355_CGC7
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_4355
- CGC Family ID: CGCFAM_08796
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_4355_6 | HRGMv2_4355_6_14 | 8162 | 9208 | - | 3.A.14.1.2 |
| TC | HRGMv2_4355_6 | HRGMv2_4355_6_15 | 9147 | 10109 | - | 3.A.14.1.1 |
| STP | HRGMv2_4355_6 | HRGMv2_4355_6_16 | 10349 | 11260 | - | PfkB |
| peptidase | HRGMv2_4355_6 | HRGMv2_4355_6_17 | 11389 | 12126 | - | M20.UNW |
| CAZyme | HRGMv2_4355_6 | HRGMv2_4355_6_18 | 12767 | 14200 | - | AA1 |
Gene ID: HRGMv2_4355_6_14
Type: TC
Location: 8162 - 9208 (-)
Type: TC
Location: 8162 - 9208 (-)
Gene ID: HRGMv2_4355_6_15
Type: TC
Location: 9147 - 10109 (-)
Type: TC
Location: 9147 - 10109 (-)
Gene ID: HRGMv2_4355_6_16
Type: STP
Location: 10349 - 11260 (-)
Type: STP
Location: 10349 - 11260 (-)
Gene ID: HRGMv2_4355_6_17
Type: peptidase
Location: 11389 - 12126 (-)
Type: peptidase
Location: 11389 - 12126 (-)
Gene ID: HRGMv2_4355_6_18
Type: CAZyme
Location: 12767 - 14200 (-)
Type: CAZyme
Location: 12767 - 14200 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota
Class
Bacilli
Order
Lactobacillales
Family
Lactobacillaceae
Genus
Pediococcus
Species
Pediococcus stilesii
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.