Cluster: HRGMv2_4355_CGC6
🧬 Cluster Details
- Gene Count: 27
- CAZyme Count: 3
- Substrate:
- Genome ID: HRGMv2_4355
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_4355_5 | HRGMv2_4355_5_8 | 4606 | 6756 | - | 3.A.3.5.2 |
| TF | HRGMv2_4355_5 | HRGMv2_4355_5_9 | 6756 | 7211 | - | Pencillinase_R |
| TC | HRGMv2_4355_5 | HRGMv2_4355_5_10 | 7368 | 8279 | - | 2.A.7.3.31 |
| TF | HRGMv2_4355_5 | HRGMv2_4355_5_11 | 8449 | 8898 | - | MarR |
| pfam | HRGMv2_4355_5 | HRGMv2_4355_5_12 | 8998 | 9873 | - | DUF915 |
| TC | HRGMv2_4355_5 | HRGMv2_4355_5_13 | 9870 | 11174 | - | 4.A.3.2.7 |
| TC | HRGMv2_4355_5 | HRGMv2_4355_5_14 | 11394 | 13016 | - | 3.A.1.121.4 |
| TC | HRGMv2_4355_5 | HRGMv2_4355_5_15 | 13103 | 14449 | - | 2.A.3.8.12 |
| TC | HRGMv2_4355_5 | HRGMv2_4355_5_16 | 14522 | 15871 | - | 2.A.40.3.2 |
| peptidase | HRGMv2_4355_5 | HRGMv2_4355_5_17 | 15893 | 17272 | - | M38.UPW |
| TC | HRGMv2_4355_5 | HRGMv2_4355_5_18 | 17416 | 19353 | - | 3.A.1.122.13 |
| TC | HRGMv2_4355_5 | HRGMv2_4355_5_19 | 19390 | 22098 | - | 3.A.3.2.41 |
| NULL(UNKNOWN) | HRGMv2_4355_5 | HRGMv2_4355_5_20 | 22261 | 22428 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | HRGMv2_4355_5 | HRGMv2_4355_5_21 | 23133 | 23831 | - | Hydrolase | HAD_2 |
| CAZyme | HRGMv2_4355_5 | HRGMv2_4355_5_22 | 23828 | 26092 | - | GH65 |
| TC | HRGMv2_4355_5 | HRGMv2_4355_5_23 | 26115 | 27218 | - | 3.A.1.1.20 |
| NULL(UNKNOWN) | HRGMv2_4355_5 | HRGMv2_4355_5_24 | 27218 | 27883 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_4355_5 | HRGMv2_4355_5_25 | 27904 | 28716 | - | 3.A.1.1.28 |
| TC | HRGMv2_4355_5 | HRGMv2_4355_5_26 | 28716 | 29576 | - | 3.A.1.1.45 |
| TC | HRGMv2_4355_5 | HRGMv2_4355_5_27 | 29624 | 30919 | - | 3.A.1.1.45 |
| CAZyme | HRGMv2_4355_5 | HRGMv2_4355_5_28 | 31165 | 32454 | - | GH13 |
| CAZyme | HRGMv2_4355_5 | HRGMv2_4355_5_29 | 32432 | 34057 | - | GH13_31 |
| TF | HRGMv2_4355_5 | HRGMv2_4355_5_30 | 34132 | 35100 | - | LacI |
| TC | HRGMv2_4355_5 | HRGMv2_4355_5_31 | 35262 | 35915 | - | 3.A.1.12.4 |
| TC | HRGMv2_4355_5 | HRGMv2_4355_5_32 | 35915 | 36841 | - | 3.A.1.12.4 |
| TC | HRGMv2_4355_5 | HRGMv2_4355_5_33 | 36842 | 37474 | - | 3.A.1.12.4 |
| TC | HRGMv2_4355_5 | HRGMv2_4355_5_34 | 37474 | 38667 | - | 3.A.1.12.4 |
Gene ID: HRGMv2_4355_5_8
Type: TC
Location: 4606 - 6756 (-)
Type: TC
Location: 4606 - 6756 (-)
Gene ID: HRGMv2_4355_5_9
Type: TF
Location: 6756 - 7211 (-)
Type: TF
Location: 6756 - 7211 (-)
Gene ID: HRGMv2_4355_5_10
Type: TC
Location: 7368 - 8279 (-)
Type: TC
Location: 7368 - 8279 (-)
Gene ID: HRGMv2_4355_5_11
Type: TF
Location: 8449 - 8898 (-)
Type: TF
Location: 8449 - 8898 (-)
Gene ID: HRGMv2_4355_5_12
Type: pfam
Location: 8998 - 9873 (-)
Type: pfam
Location: 8998 - 9873 (-)
Gene ID: HRGMv2_4355_5_13
Type: TC
Location: 9870 - 11174 (-)
Type: TC
Location: 9870 - 11174 (-)
Gene ID: HRGMv2_4355_5_14
Type: TC
Location: 11394 - 13016 (-)
Type: TC
Location: 11394 - 13016 (-)
Gene ID: HRGMv2_4355_5_15
Type: TC
Location: 13103 - 14449 (-)
Type: TC
Location: 13103 - 14449 (-)
Gene ID: HRGMv2_4355_5_16
Type: TC
Location: 14522 - 15871 (-)
Type: TC
Location: 14522 - 15871 (-)
Gene ID: HRGMv2_4355_5_17
Type: peptidase
Location: 15893 - 17272 (-)
Type: peptidase
Location: 15893 - 17272 (-)
Gene ID: HRGMv2_4355_5_18
Type: TC
Location: 17416 - 19353 (-)
Type: TC
Location: 17416 - 19353 (-)
Gene ID: HRGMv2_4355_5_19
Type: TC
Location: 19390 - 22098 (-)
Type: TC
Location: 19390 - 22098 (-)
Gene ID: HRGMv2_4355_5_20
Type:
Location: 22261 - 22428 (+)
Type:
Location: 22261 - 22428 (+)
Gene ID: HRGMv2_4355_5_21
Type: pfam
Location: 23133 - 23831 (-)
Type: pfam
Location: 23133 - 23831 (-)
Gene ID: HRGMv2_4355_5_22
Type: CAZyme
Location: 23828 - 26092 (-)
Type: CAZyme
Location: 23828 - 26092 (-)
Gene ID: HRGMv2_4355_5_23
Type: TC
Location: 26115 - 27218 (-)
Type: TC
Location: 26115 - 27218 (-)
Gene ID: HRGMv2_4355_5_24
Type:
Location: 27218 - 27883 (-)
Type:
Location: 27218 - 27883 (-)
Gene ID: HRGMv2_4355_5_25
Type: TC
Location: 27904 - 28716 (-)
Type: TC
Location: 27904 - 28716 (-)
Gene ID: HRGMv2_4355_5_26
Type: TC
Location: 28716 - 29576 (-)
Type: TC
Location: 28716 - 29576 (-)
Gene ID: HRGMv2_4355_5_27
Type: TC
Location: 29624 - 30919 (-)
Type: TC
Location: 29624 - 30919 (-)
Gene ID: HRGMv2_4355_5_28
Type: CAZyme
Location: 31165 - 32454 (-)
Type: CAZyme
Location: 31165 - 32454 (-)
Gene ID: HRGMv2_4355_5_29
Type: CAZyme
Location: 32432 - 34057 (-)
Type: CAZyme
Location: 32432 - 34057 (-)
Gene ID: HRGMv2_4355_5_30
Type: TF
Location: 34132 - 35100 (-)
Type: TF
Location: 34132 - 35100 (-)
Gene ID: HRGMv2_4355_5_31
Type: TC
Location: 35262 - 35915 (-)
Type: TC
Location: 35262 - 35915 (-)
Gene ID: HRGMv2_4355_5_32
Type: TC
Location: 35915 - 36841 (-)
Type: TC
Location: 35915 - 36841 (-)
Gene ID: HRGMv2_4355_5_33
Type: TC
Location: 36842 - 37474 (-)
Type: TC
Location: 36842 - 37474 (-)
Gene ID: HRGMv2_4355_5_34
Type: TC
Location: 37474 - 38667 (-)
Type: TC
Location: 37474 - 38667 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota
Class
Bacilli
Order
Lactobacillales
Family
Lactobacillaceae
Genus
Pediococcus
Species
Pediococcus stilesii
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.