Cluster: HRGMv2_4355_CGC5
🧬 Cluster Details
- Gene Count: 14
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_4355
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_4355_4 | HRGMv2_4355_4_79 | 87791 | 88723 | - | 3.A.1.126.1 |
| peptidase | HRGMv2_4355_4 | HRGMv2_4355_4_80 | 88889 | 89389 | + | I51.UPW |
| pfam | HRGMv2_4355_4 | HRGMv2_4355_4_81 | 89474 | 90016 | - | PRiA4_ORF3 |
| TC | HRGMv2_4355_4 | HRGMv2_4355_4_82 | 90136 | 91107 | - | 2.A.69.4.5 |
| pfam | HRGMv2_4355_4 | HRGMv2_4355_4_83 | 91147 | 92775 | - | malic | Malic_M |
| TF | HRGMv2_4355_4 | HRGMv2_4355_4_84 | 92913 | 93800 | + | HTH_1 |
| CAZyme | HRGMv2_4355_4 | HRGMv2_4355_4_85 | 93977 | 95371 | + | AA4 |
| pfam | HRGMv2_4355_4 | HRGMv2_4355_4_86 | 95431 | 95733 | - | YafQ_toxin |
| STP | HRGMv2_4355_4 | HRGMv2_4355_4_87 | 96165 | 97535 | - | Pyr_redox_2 |
| TC | HRGMv2_4355_4 | HRGMv2_4355_4_88 | 97649 | 98188 | - | 1.A.78.2.1 |
| peptidase | HRGMv2_4355_4 | HRGMv2_4355_4_89 | 98277 | 99071 | - | S09.UNW |
| TC | HRGMv2_4355_4 | HRGMv2_4355_4_90 | 99327 | 100241 | - | 8.A.5.1.4 |
| pfam | HRGMv2_4355_4 | HRGMv2_4355_4_91 | 100315 | 100941 | - | Hydrolase | HAD_2 |
| TC | HRGMv2_4355_4 | HRGMv2_4355_4_92 | 101045 | 102565 | + | 2.A.49.5.5 |
Gene ID: HRGMv2_4355_4_79
Type: TC
Location: 87791 - 88723 (-)
Type: TC
Location: 87791 - 88723 (-)
Gene ID: HRGMv2_4355_4_80
Type: peptidase
Location: 88889 - 89389 (+)
Type: peptidase
Location: 88889 - 89389 (+)
Gene ID: HRGMv2_4355_4_81
Type: pfam
Location: 89474 - 90016 (-)
Type: pfam
Location: 89474 - 90016 (-)
Gene ID: HRGMv2_4355_4_82
Type: TC
Location: 90136 - 91107 (-)
Type: TC
Location: 90136 - 91107 (-)
Gene ID: HRGMv2_4355_4_83
Type: pfam
Location: 91147 - 92775 (-)
Type: pfam
Location: 91147 - 92775 (-)
Gene ID: HRGMv2_4355_4_84
Type: TF
Location: 92913 - 93800 (+)
Type: TF
Location: 92913 - 93800 (+)
Gene ID: HRGMv2_4355_4_85
Type: CAZyme
Location: 93977 - 95371 (+)
Type: CAZyme
Location: 93977 - 95371 (+)
Gene ID: HRGMv2_4355_4_86
Type: pfam
Location: 95431 - 95733 (-)
Type: pfam
Location: 95431 - 95733 (-)
Gene ID: HRGMv2_4355_4_87
Type: STP
Location: 96165 - 97535 (-)
Type: STP
Location: 96165 - 97535 (-)
Gene ID: HRGMv2_4355_4_88
Type: TC
Location: 97649 - 98188 (-)
Type: TC
Location: 97649 - 98188 (-)
Gene ID: HRGMv2_4355_4_89
Type: peptidase
Location: 98277 - 99071 (-)
Type: peptidase
Location: 98277 - 99071 (-)
Gene ID: HRGMv2_4355_4_90
Type: TC
Location: 99327 - 100241 (-)
Type: TC
Location: 99327 - 100241 (-)
Gene ID: HRGMv2_4355_4_91
Type: pfam
Location: 100315 - 100941 (-)
Type: pfam
Location: 100315 - 100941 (-)
Gene ID: HRGMv2_4355_4_92
Type: TC
Location: 101045 - 102565 (+)
Type: TC
Location: 101045 - 102565 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota
Class
Bacilli
Order
Lactobacillales
Family
Lactobacillaceae
Genus
Pediococcus
Species
Pediococcus stilesii
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.