Cluster: HRGMv2_4355_CGC3
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_4355
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_4355_2 | HRGMv2_4355_2_135 | 132056 | 133078 | + | GT2 |
| NULL(UNKNOWN) | HRGMv2_4355_2 | HRGMv2_4355_2_136 | 133096 | 133260 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_4355_2 | HRGMv2_4355_2_137 | 133368 | 135176 | - | 3.A.1.134.11 |
| TC | HRGMv2_4355_2 | HRGMv2_4355_2_138 | 135188 | 135946 | - | 3.A.1.134.3 |
| NULL(UNKNOWN) | HRGMv2_4355_2 | HRGMv2_4355_2_139 | 136123 | 136413 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | HRGMv2_4355_2 | HRGMv2_4355_2_140 | 136410 | 136973 | - | Lysine_decarbox | LDcluster4 |
| TC | HRGMv2_4355_2 | HRGMv2_4355_2_141 | 137323 | 139266 | + | 9.B.97.5.1 |
Gene ID: HRGMv2_4355_2_135
Type: CAZyme
Location: 132056 - 133078 (+)
Type: CAZyme
Location: 132056 - 133078 (+)
Gene ID: HRGMv2_4355_2_136
Type:
Location: 133096 - 133260 (+)
Type:
Location: 133096 - 133260 (+)
Gene ID: HRGMv2_4355_2_137
Type: TC
Location: 133368 - 135176 (-)
Type: TC
Location: 133368 - 135176 (-)
Gene ID: HRGMv2_4355_2_138
Type: TC
Location: 135188 - 135946 (-)
Type: TC
Location: 135188 - 135946 (-)
Gene ID: HRGMv2_4355_2_139
Type:
Location: 136123 - 136413 (+)
Type:
Location: 136123 - 136413 (+)
Gene ID: HRGMv2_4355_2_140
Type: pfam
Location: 136410 - 136973 (-)
Type: pfam
Location: 136410 - 136973 (-)
Gene ID: HRGMv2_4355_2_141
Type: TC
Location: 137323 - 139266 (+)
Type: TC
Location: 137323 - 139266 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota
Class
Bacilli
Order
Lactobacillales
Family
Lactobacillaceae
Genus
Pediococcus
Species
Pediococcus stilesii
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.