Cluster: HRGMv2_4355_CGC14
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_4355
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_4355_28 | HRGMv2_4355_28_8 | 6683 | 7567 | - | CE4 |
| NULL(UNKNOWN) | HRGMv2_4355_28 | HRGMv2_4355_28_9 | 7560 | 7847 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_4355_28 | HRGMv2_4355_28_10 | 7831 | 9066 | - | GT2 |
| TF | HRGMv2_4355_28 | HRGMv2_4355_28_11 | 9384 | 10133 | - | HTH_6 |
| STP | HRGMv2_4355_28 | HRGMv2_4355_28_12 | 10254 | 11189 | + | PfkB |
| TC | HRGMv2_4355_28 | HRGMv2_4355_28_13 | 11191 | 13098 | + | 4.A.2.1.8 |
Gene ID: HRGMv2_4355_28_8
Type: CAZyme
Location: 6683 - 7567 (-)
Type: CAZyme
Location: 6683 - 7567 (-)
Gene ID: HRGMv2_4355_28_9
Type:
Location: 7560 - 7847 (-)
Type:
Location: 7560 - 7847 (-)
Gene ID: HRGMv2_4355_28_10
Type: CAZyme
Location: 7831 - 9066 (-)
Type: CAZyme
Location: 7831 - 9066 (-)
Gene ID: HRGMv2_4355_28_11
Type: TF
Location: 9384 - 10133 (-)
Type: TF
Location: 9384 - 10133 (-)
Gene ID: HRGMv2_4355_28_12
Type: STP
Location: 10254 - 11189 (+)
Type: STP
Location: 10254 - 11189 (+)
Gene ID: HRGMv2_4355_28_13
Type: TC
Location: 11191 - 13098 (+)
Type: TC
Location: 11191 - 13098 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota
Class
Bacilli
Order
Lactobacillales
Family
Lactobacillaceae
Genus
Pediococcus
Species
Pediococcus stilesii
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.