Cluster: HRGMv2_4355_CGC10
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_4355
- CGC Family ID: CGCFAM_01120
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_4355_10 | HRGMv2_4355_10_61 | 54442 | 57090 | - | 3.A.3.2.28 |
| pfam | HRGMv2_4355_10 | HRGMv2_4355_10_62 | 57316 | 58134 | - | NAD_synthase |
| pfam | HRGMv2_4355_10 | HRGMv2_4355_10_63 | 58154 | 59617 | - | NAPRTase | NAPRTase_N | NAPRTase_C |
| CAZyme | HRGMv2_4355_10 | HRGMv2_4355_10_64 | 59727 | 60449 | + | GT26 |
| TF | HRGMv2_4355_10 | HRGMv2_4355_10_65 | 60536 | 61237 | - | GntR |
| CAZyme | HRGMv2_4355_10 | HRGMv2_4355_10_66 | 61263 | 62408 | - | CE9 |
| pfam | HRGMv2_4355_10 | HRGMv2_4355_10_67 | 62473 | 63264 | - | NAD_binding_2 | F420_oxidored | P5CR_dimer |
| STP | HRGMv2_4355_10 | HRGMv2_4355_10_68 | 63412 | 64770 | - | Pyr_redox_2 |
| TC | HRGMv2_4355_10 | HRGMv2_4355_10_69 | 64858 | 66141 | - | 2.A.3.6.1 |
| pfam | HRGMv2_4355_10 | HRGMv2_4355_10_70 | 67040 | 67855 | - | Metallophos |
| pfam | HRGMv2_4355_10 | HRGMv2_4355_10_71 | 67857 | 68393 | - | RibD_C |
| TC | HRGMv2_4355_10 | HRGMv2_4355_10_72 | 68479 | 69945 | - | 2.A.17.1.6 |
Gene ID: HRGMv2_4355_10_61
Type: TC
Location: 54442 - 57090 (-)
Type: TC
Location: 54442 - 57090 (-)
Gene ID: HRGMv2_4355_10_62
Type: pfam
Location: 57316 - 58134 (-)
Type: pfam
Location: 57316 - 58134 (-)
Gene ID: HRGMv2_4355_10_63
Type: pfam
Location: 58154 - 59617 (-)
Type: pfam
Location: 58154 - 59617 (-)
Gene ID: HRGMv2_4355_10_64
Type: CAZyme
Location: 59727 - 60449 (+)
Type: CAZyme
Location: 59727 - 60449 (+)
Gene ID: HRGMv2_4355_10_65
Type: TF
Location: 60536 - 61237 (-)
Type: TF
Location: 60536 - 61237 (-)
Gene ID: HRGMv2_4355_10_66
Type: CAZyme
Location: 61263 - 62408 (-)
Type: CAZyme
Location: 61263 - 62408 (-)
Gene ID: HRGMv2_4355_10_67
Type: pfam
Location: 62473 - 63264 (-)
Type: pfam
Location: 62473 - 63264 (-)
Gene ID: HRGMv2_4355_10_68
Type: STP
Location: 63412 - 64770 (-)
Type: STP
Location: 63412 - 64770 (-)
Gene ID: HRGMv2_4355_10_69
Type: TC
Location: 64858 - 66141 (-)
Type: TC
Location: 64858 - 66141 (-)
Gene ID: HRGMv2_4355_10_70
Type: pfam
Location: 67040 - 67855 (-)
Type: pfam
Location: 67040 - 67855 (-)
Gene ID: HRGMv2_4355_10_71
Type: pfam
Location: 67857 - 68393 (-)
Type: pfam
Location: 67857 - 68393 (-)
Gene ID: HRGMv2_4355_10_72
Type: TC
Location: 68479 - 69945 (-)
Type: TC
Location: 68479 - 69945 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota
Class
Bacilli
Order
Lactobacillales
Family
Lactobacillaceae
Genus
Pediococcus
Species
Pediococcus stilesii
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.