Cluster: HRGMv2_4338_CGC4
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_4338
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_4338_19 | HRGMv2_4338_19_6 | 7947 | 8969 | - | GT4 |
| CAZyme | HRGMv2_4338_19 | HRGMv2_4338_19_7 | 8981 | 10159 | - | GT4 |
| TC | HRGMv2_4338_19 | HRGMv2_4338_19_8 | 11135 | 12865 | - | 8.A.7.1.1 |
| STP | HRGMv2_4338_19 | HRGMv2_4338_19_9 | 12865 | 13131 | - | PTS-HPr |
| NULL(UNKNOWN) | HRGMv2_4338_19 | HRGMv2_4338_19_10 | 13283 | 13480 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_4338_19 | HRGMv2_4338_19_11 | 14112 | 14495 | + | 3.A.9.1.2 |
Gene ID: HRGMv2_4338_19_6
Type: CAZyme
Location: 7947 - 8969 (-)
Type: CAZyme
Location: 7947 - 8969 (-)
Gene ID: HRGMv2_4338_19_7
Type: CAZyme
Location: 8981 - 10159 (-)
Type: CAZyme
Location: 8981 - 10159 (-)
Gene ID: HRGMv2_4338_19_8
Type: TC
Location: 11135 - 12865 (-)
Type: TC
Location: 11135 - 12865 (-)
Gene ID: HRGMv2_4338_19_9
Type: STP
Location: 12865 - 13131 (-)
Type: STP
Location: 12865 - 13131 (-)
Gene ID: HRGMv2_4338_19_10
Type:
Location: 13283 - 13480 (-)
Type:
Location: 13283 - 13480 (-)
Gene ID: HRGMv2_4338_19_11
Type: TC
Location: 14112 - 14495 (+)
Type: TC
Location: 14112 - 14495 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota
Class
Bacilli
Order
Lactobacillales
Family
Lactobacillaceae
Genus
Lactiplantibacillus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.