Cluster: HRGMv2_4334_CGC13
🧬 Cluster Details
- Gene Count: 15
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_4334
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_4334_17 | HRGMv2_4334_17_5 | 5771 | 7507 | - | 3.A.1.129.1 |
| TC | HRGMv2_4334_17 | HRGMv2_4334_17_6 | 7504 | 9330 | - | 3.A.1.129.1 |
| TC | HRGMv2_4334_17 | HRGMv2_4334_17_7 | 9519 | 10529 | - | 3.D.4.3.2 |
| TC | HRGMv2_4334_17 | HRGMv2_4334_17_8 | 10522 | 11976 | - | 3.D.4.3.2 |
| pfam | HRGMv2_4334_17 | HRGMv2_4334_17_9 | 12264 | 13214 | + | 2-Hacid_dh | 2-Hacid_dh_C |
| pfam | HRGMv2_4334_17 | HRGMv2_4334_17_10 | 13696 | 15159 | - | Polysacc_synt |
| CAZyme | HRGMv2_4334_17 | HRGMv2_4334_17_11 | 15199 | 16200 | - | GT2 |
| NULL(UNKNOWN) | HRGMv2_4334_17 | HRGMv2_4334_17_12 | 16197 | 17651 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_4334_17 | HRGMv2_4334_17_13 | 17648 | 18400 | - | GT32 |
| pfam | HRGMv2_4334_17 | HRGMv2_4334_17_14 | 18397 | 18888 | - | Glyco_tran_28_C |
| pfam | HRGMv2_4334_17 | HRGMv2_4334_17_15 | 18888 | 19337 | - | Alg14 |
| TC | HRGMv2_4334_17 | HRGMv2_4334_17_16 | 19361 | 20029 | - | 9.B.18.1.2 |
| pfam | HRGMv2_4334_17 | HRGMv2_4334_17_17 | 20069 | 20803 | - | CpsB_CapC |
| TC | HRGMv2_4334_17 | HRGMv2_4334_17_18 | 20804 | 21538 | - | 8.A.3.2.1 |
| TC | HRGMv2_4334_17 | HRGMv2_4334_17_19 | 21549 | 22316 | - | 8.A.3.2.4 |
Gene ID: HRGMv2_4334_17_5
Type: TC
Location: 5771 - 7507 (-)
Type: TC
Location: 5771 - 7507 (-)
Gene ID: HRGMv2_4334_17_6
Type: TC
Location: 7504 - 9330 (-)
Type: TC
Location: 7504 - 9330 (-)
Gene ID: HRGMv2_4334_17_7
Type: TC
Location: 9519 - 10529 (-)
Type: TC
Location: 9519 - 10529 (-)
Gene ID: HRGMv2_4334_17_8
Type: TC
Location: 10522 - 11976 (-)
Type: TC
Location: 10522 - 11976 (-)
Gene ID: HRGMv2_4334_17_9
Type: pfam
Location: 12264 - 13214 (+)
Type: pfam
Location: 12264 - 13214 (+)
Gene ID: HRGMv2_4334_17_10
Type: pfam
Location: 13696 - 15159 (-)
Type: pfam
Location: 13696 - 15159 (-)
Gene ID: HRGMv2_4334_17_11
Type: CAZyme
Location: 15199 - 16200 (-)
Type: CAZyme
Location: 15199 - 16200 (-)
Gene ID: HRGMv2_4334_17_12
Type:
Location: 16197 - 17651 (-)
Type:
Location: 16197 - 17651 (-)
Gene ID: HRGMv2_4334_17_13
Type: CAZyme
Location: 17648 - 18400 (-)
Type: CAZyme
Location: 17648 - 18400 (-)
Gene ID: HRGMv2_4334_17_14
Type: pfam
Location: 18397 - 18888 (-)
Type: pfam
Location: 18397 - 18888 (-)
Gene ID: HRGMv2_4334_17_15
Type: pfam
Location: 18888 - 19337 (-)
Type: pfam
Location: 18888 - 19337 (-)
Gene ID: HRGMv2_4334_17_16
Type: TC
Location: 19361 - 20029 (-)
Type: TC
Location: 19361 - 20029 (-)
Gene ID: HRGMv2_4334_17_17
Type: pfam
Location: 20069 - 20803 (-)
Type: pfam
Location: 20069 - 20803 (-)
Gene ID: HRGMv2_4334_17_18
Type: TC
Location: 20804 - 21538 (-)
Type: TC
Location: 20804 - 21538 (-)
Gene ID: HRGMv2_4334_17_19
Type: TC
Location: 21549 - 22316 (-)
Type: TC
Location: 21549 - 22316 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota
Class
Bacilli
Order
Lactobacillales
Family
Lactobacillaceae
Genus
Levilactobacillus
Species
Levilactobacillus yonginensis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.