dbCAN Logo

Cluster: HRGMv2_4332_CGC11

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_4332_18 HRGMv2_4332_18_9 11599 12498 + 2.A.7.3.12
TC HRGMv2_4332_18 HRGMv2_4332_18_10 12563 13114 - 3.A.1.25.2
TC HRGMv2_4332_18 HRGMv2_4332_18_11 13180 14475 - 2.A.115.2.14
TF HRGMv2_4332_18 HRGMv2_4332_18_12 14508 14924 - MarR
TF HRGMv2_4332_18 HRGMv2_4332_18_13 15477 16349 - HTH_AraC | HTH_AraC
CAZyme HRGMv2_4332_18 HRGMv2_4332_18_14 16475 18208 + GH36
TC HRGMv2_4332_18 HRGMv2_4332_18_15 18225 19484 + 3.A.1.1.47
TC HRGMv2_4332_18 HRGMv2_4332_18_16 19629 20510 + 3.A.1.1.18
TC HRGMv2_4332_18 HRGMv2_4332_18_17 20510 21331 + 3.A.1.1.11
CAZyme HRGMv2_4332_18 HRGMv2_4332_18_18 21418 23664 + GH36
NULL(UNKNOWN) HRGMv2_4332_18 HRGMv2_4332_18_19 23677 25173 + NULL(UNKNOWN)
[View Structural Homologs]
pfam HRGMv2_4332_18 HRGMv2_4332_18_20 25319 26527 + Flavoprotein | DFP
TC HRGMv2_4332_18 HRGMv2_4332_18_21 26598 27269 + 2.A.87.2.3
pfam HRGMv2_4332_18 HRGMv2_4332_18_22 27273 28040 + Pan_kinase
TC HRGMv2_4332_18 HRGMv2_4332_18_23 28073 29443 + 2.A.66.1.33
TC HRGMv2_4332_18 HRGMv2_4332_18_24 29531 30910 - 2.A.66.1.13
Gene ID: HRGMv2_4332_18_9
Type: TC
Location: 11599 - 12498 (+)
Gene ID: HRGMv2_4332_18_10
Type: TC
Location: 12563 - 13114 (-)
Gene ID: HRGMv2_4332_18_11
Type: TC
Location: 13180 - 14475 (-)
Gene ID: HRGMv2_4332_18_12
Type: TF
Location: 14508 - 14924 (-)
Gene ID: HRGMv2_4332_18_13
Type: TF
Location: 15477 - 16349 (-)
Gene ID: HRGMv2_4332_18_14
Type: CAZyme
Location: 16475 - 18208 (+)
Gene ID: HRGMv2_4332_18_15
Type: TC
Location: 18225 - 19484 (+)
Gene ID: HRGMv2_4332_18_16
Type: TC
Location: 19629 - 20510 (+)
Gene ID: HRGMv2_4332_18_17
Type: TC
Location: 20510 - 21331 (+)
Gene ID: HRGMv2_4332_18_18
Type: CAZyme
Location: 21418 - 23664 (+)
Gene ID: HRGMv2_4332_18_19
Type:
Location: 23677 - 25173 (+)
Gene ID: HRGMv2_4332_18_20
Type: pfam
Location: 25319 - 26527 (+)
Gene ID: HRGMv2_4332_18_21
Type: TC
Location: 26598 - 27269 (+)
Gene ID: HRGMv2_4332_18_22
Type: pfam
Location: 27273 - 28040 (+)
Gene ID: HRGMv2_4332_18_23
Type: TC
Location: 28073 - 29443 (+)
Gene ID: HRGMv2_4332_18_24
Type: TC
Location: 29531 - 30910 (-)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacillota_A
→
Class
Clostridia
→
Order
Lachnospirales
→
Family
Lachnospiraceae
→
Genus
Sellimonas
→

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

Loading chart...

No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

← Back to Cluster List