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Cluster: HRGMv2_4322_CGC2

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_4322_2 HRGMv2_4322_2_15 18603 20102 + 2.A.50.2.1
pfam HRGMv2_4322_2 HRGMv2_4322_2_16 20203 21516 + DHHW | DHHW
pfam HRGMv2_4322_2 HRGMv2_4322_2_17 21799 22710 + Lipase_GDSL_2
TC HRGMv2_4322_2 HRGMv2_4322_2_18 22896 23753 - 3.A.1.1.36
TC HRGMv2_4322_2 HRGMv2_4322_2_19 23766 24677 - 3.A.1.1.4
NULL(UNKNOWN) HRGMv2_4322_2 HRGMv2_4322_2_20 24752 26176 - NULL(UNKNOWN)
[View Structural Homologs]
TF HRGMv2_4322_2 HRGMv2_4322_2_21 26239 27258 - LacI
CAZyme HRGMv2_4322_2 HRGMv2_4322_2_22 27593 30028 + GH94
pfam HRGMv2_4322_2 HRGMv2_4322_2_23 30151 32421 - Aconitase
TC HRGMv2_4322_2 HRGMv2_4322_2_24 32587 34122 - 2.A.80.1.3
Gene ID: HRGMv2_4322_2_15
Type: TC
Location: 18603 - 20102 (+)
Gene ID: HRGMv2_4322_2_16
Type: pfam
Location: 20203 - 21516 (+)
Gene ID: HRGMv2_4322_2_17
Type: pfam
Location: 21799 - 22710 (+)
Gene ID: HRGMv2_4322_2_18
Type: TC
Location: 22896 - 23753 (-)
Gene ID: HRGMv2_4322_2_19
Type: TC
Location: 23766 - 24677 (-)
Gene ID: HRGMv2_4322_2_20
Type:
Location: 24752 - 26176 (-)
Gene ID: HRGMv2_4322_2_21
Type: TF
Location: 26239 - 27258 (-)
Gene ID: HRGMv2_4322_2_22
Type: CAZyme
Location: 27593 - 30028 (+)
Gene ID: HRGMv2_4322_2_23
Type: pfam
Location: 30151 - 32421 (-)
Gene ID: HRGMv2_4322_2_24
Type: TC
Location: 32587 - 34122 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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