Cluster: HRGMv2_4317_CGC7
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 3
- Substrate: beta-mannan
- Genome ID: HRGMv2_4317
- CGC Family ID: CGCFAM_00226
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_4317_60 | HRGMv2_4317_60_21 | 16298 | 16948 | + | 2.A.115.2.10 |
| NULL(UNKNOWN) | HRGMv2_4317_60 | HRGMv2_4317_60_22 | 17008 | 17277 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | HRGMv2_4317_60 | HRGMv2_4317_60_23 | 17297 | 19021 | - | PGM_PMM_I | PGM_PMM_II | PGM_PMM_III |
| CAZyme | HRGMv2_4317_60 | HRGMv2_4317_60_24 | 19153 | 20229 | - | CBM35inCE17 | CE17 |
| CAZyme | HRGMv2_4317_60 | HRGMv2_4317_60_25 | 20282 | 21349 | - | CE2 |
| CAZyme | HRGMv2_4317_60 | HRGMv2_4317_60_26 | 21517 | 22230 | - | GH130_1 |
Gene ID: HRGMv2_4317_60_21
Type: TC
Location: 16298 - 16948 (+)
Type: TC
Location: 16298 - 16948 (+)
Gene ID: HRGMv2_4317_60_22
Type:
Location: 17008 - 17277 (-)
Type:
Location: 17008 - 17277 (-)
Gene ID: HRGMv2_4317_60_23
Type: pfam
Location: 17297 - 19021 (-)
Type: pfam
Location: 17297 - 19021 (-)
Gene ID: HRGMv2_4317_60_24
Type: CAZyme
Location: 19153 - 20229 (-)
Type: CAZyme
Location: 19153 - 20229 (-)
Gene ID: HRGMv2_4317_60_25
Type: CAZyme
Location: 20282 - 21349 (-)
Type: CAZyme
Location: 20282 - 21349 (-)
Gene ID: HRGMv2_4317_60_26
Type: CAZyme
Location: 21517 - 22230 (-)
Type: CAZyme
Location: 21517 - 22230 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Caccovicinus
Species
Caccovicinus sp017889125
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.