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Cluster: HRGMv2_4317_CGC59

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_4317_316 HRGMv2_4317_316_1 324 2468 + CBM34 | GH13_39
pfam HRGMv2_4317_316 HRGMv2_4317_316_2 2728 3540 + PHP
TC HRGMv2_4317_316 HRGMv2_4317_316_3 3670 4290 + 2.A.115.2.14
TF HRGMv2_4317_316 HRGMv2_4317_316_4 4372 4851 + MarR
TC HRGMv2_4317_316 HRGMv2_4317_316_5 4814 6556 + 3.A.1.135.5
TC HRGMv2_4317_316 HRGMv2_4317_316_6 6549 8441 + 3.A.1.135.5
CAZyme HRGMv2_4317_316 HRGMv2_4317_316_7 8666 10549 + GH13_4
TF HRGMv2_4317_316 HRGMv2_4317_316_8 10591 11643 + LacI
TC HRGMv2_4317_316 HRGMv2_4317_316_9 11809 12387 + 4.A.1.2.2
Gene ID: HRGMv2_4317_316_1
Type: CAZyme
Location: 324 - 2468 (+)
Gene ID: HRGMv2_4317_316_2
Type: pfam
Location: 2728 - 3540 (+)
Gene ID: HRGMv2_4317_316_3
Type: TC
Location: 3670 - 4290 (+)
Gene ID: HRGMv2_4317_316_4
Type: TF
Location: 4372 - 4851 (+)
Gene ID: HRGMv2_4317_316_5
Type: TC
Location: 4814 - 6556 (+)
Gene ID: HRGMv2_4317_316_6
Type: TC
Location: 6549 - 8441 (+)
Gene ID: HRGMv2_4317_316_7
Type: CAZyme
Location: 8666 - 10549 (+)
Gene ID: HRGMv2_4317_316_8
Type: TF
Location: 10591 - 11643 (+)
Gene ID: HRGMv2_4317_316_9
Type: TC
Location: 11809 - 12387 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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