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Cluster: HRGMv2_4317_CGC57

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_4317_305 HRGMv2_4317_305_1 589 2301 + 3.A.18.1.1
CAZyme HRGMv2_4317_305 HRGMv2_4317_305_2 2592 3731 + CE9
STP HRGMv2_4317_305 HRGMv2_4317_305_3 3868 4998 - Peripla_BP_2
TC HRGMv2_4317_305 HRGMv2_4317_305_4 5036 5788 - 3.A.1.14.7
pfam HRGMv2_4317_305 HRGMv2_4317_305_5 5812 6789 - FecCD
TC HRGMv2_4317_305 HRGMv2_4317_305_6 6789 7826 - 3.A.1.14.14
STP HRGMv2_4317_305 HRGMv2_4317_305_7 8160 9098 + SBP_bac_1
TC HRGMv2_4317_305 HRGMv2_4317_305_8 9114 10076 + 3.A.1.7.5
TC HRGMv2_4317_305 HRGMv2_4317_305_9 10073 10972 + 3.A.1.7.5
TC HRGMv2_4317_305 HRGMv2_4317_305_10 10984 11754 + 3.A.1.7.5
Gene ID: HRGMv2_4317_305_1
Type: TC
Location: 589 - 2301 (+)
Gene ID: HRGMv2_4317_305_2
Type: CAZyme
Location: 2592 - 3731 (+)
Gene ID: HRGMv2_4317_305_3
Type: STP
Location: 3868 - 4998 (-)
Gene ID: HRGMv2_4317_305_4
Type: TC
Location: 5036 - 5788 (-)
Gene ID: HRGMv2_4317_305_5
Type: pfam
Location: 5812 - 6789 (-)
Gene ID: HRGMv2_4317_305_6
Type: TC
Location: 6789 - 7826 (-)
Gene ID: HRGMv2_4317_305_7
Type: STP
Location: 8160 - 9098 (+)
Gene ID: HRGMv2_4317_305_8
Type: TC
Location: 9114 - 10076 (+)
Gene ID: HRGMv2_4317_305_9
Type: TC
Location: 10073 - 10972 (+)
Gene ID: HRGMv2_4317_305_10
Type: TC
Location: 10984 - 11754 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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