Cluster: HRGMv2_4317_CGC54
🧬 Cluster Details
- Gene Count: 11
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_4317
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_4317_288 | HRGMv2_4317_288_7 | 4956 | 7580 | - | 2.A.21.9.1 |
| pfam | HRGMv2_4317_288 | HRGMv2_4317_288_8 | 7586 | 8413 | - | H2O2_YaaD |
| pfam | HRGMv2_4317_288 | HRGMv2_4317_288_9 | 8410 | 8874 | - | AhpC-TSA | Redoxin |
| CAZyme | HRGMv2_4317_288 | HRGMv2_4317_288_10 | 9177 | 10991 | - | GH2 |
| pfam | HRGMv2_4317_288 | HRGMv2_4317_288_11 | 11037 | 11435 | - | TM2 |
| TC | HRGMv2_4317_288 | HRGMv2_4317_288_12 | 11566 | 13188 | - | 2.A.2.1.1 |
| CAZyme | HRGMv2_4317_288 | HRGMv2_4317_288_13 | 13275 | 14975 | - | GH3 |
| pfam | HRGMv2_4317_288 | HRGMv2_4317_288_14 | 15110 | 15949 | - | Hydrolase | HAD_2 |
| TF | HRGMv2_4317_288 | HRGMv2_4317_288_15 | 16134 | 17387 | + | HTH_AraC | HTH_AraC |
| TC | HRGMv2_4317_288 | HRGMv2_4317_288_16 | 17514 | 18257 | - | 3.A.1.3.20 |
| TC | HRGMv2_4317_288 | HRGMv2_4317_288_17 | 18262 | 19146 | - | 3.A.1.3.12 |
Gene ID: HRGMv2_4317_288_7
Type: TC
Location: 4956 - 7580 (-)
Type: TC
Location: 4956 - 7580 (-)
Gene ID: HRGMv2_4317_288_8
Type: pfam
Location: 7586 - 8413 (-)
Type: pfam
Location: 7586 - 8413 (-)
Gene ID: HRGMv2_4317_288_9
Type: pfam
Location: 8410 - 8874 (-)
Type: pfam
Location: 8410 - 8874 (-)
Gene ID: HRGMv2_4317_288_10
Type: CAZyme
Location: 9177 - 10991 (-)
Type: CAZyme
Location: 9177 - 10991 (-)
Gene ID: HRGMv2_4317_288_11
Type: pfam
Location: 11037 - 11435 (-)
Type: pfam
Location: 11037 - 11435 (-)
Gene ID: HRGMv2_4317_288_12
Type: TC
Location: 11566 - 13188 (-)
Type: TC
Location: 11566 - 13188 (-)
Gene ID: HRGMv2_4317_288_13
Type: CAZyme
Location: 13275 - 14975 (-)
Type: CAZyme
Location: 13275 - 14975 (-)
Gene ID: HRGMv2_4317_288_14
Type: pfam
Location: 15110 - 15949 (-)
Type: pfam
Location: 15110 - 15949 (-)
Gene ID: HRGMv2_4317_288_15
Type: TF
Location: 16134 - 17387 (+)
Type: TF
Location: 16134 - 17387 (+)
Gene ID: HRGMv2_4317_288_16
Type: TC
Location: 17514 - 18257 (-)
Type: TC
Location: 17514 - 18257 (-)
Gene ID: HRGMv2_4317_288_17
Type: TC
Location: 18262 - 19146 (-)
Type: TC
Location: 18262 - 19146 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Caccovicinus
Species
Caccovicinus sp017889125
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.