Cluster: HRGMv2_4317_CGC47
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_4317
- CGC Family ID: CGCFAM_02574
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_4317_270 | HRGMv2_4317_270_3 | 2519 | 4177 | + | 3.A.1.1.9 |
| pfam | HRGMv2_4317_270 | HRGMv2_4317_270_4 | 4465 | 5193 | + | Bac_rhamnosid_N |
| CAZyme | HRGMv2_4317_270 | HRGMv2_4317_270_5 | 5163 | 7115 | + | GH78 |
| CAZyme | HRGMv2_4317_270 | HRGMv2_4317_270_6 | 7255 | 8571 | + | GH140 |
Gene ID: HRGMv2_4317_270_3
Type: TC
Location: 2519 - 4177 (+)
Type: TC
Location: 2519 - 4177 (+)
Gene ID: HRGMv2_4317_270_4
Type: pfam
Location: 4465 - 5193 (+)
Type: pfam
Location: 4465 - 5193 (+)
Gene ID: HRGMv2_4317_270_5
Type: CAZyme
Location: 5163 - 7115 (+)
Type: CAZyme
Location: 5163 - 7115 (+)
Gene ID: HRGMv2_4317_270_6
Type: CAZyme
Location: 7255 - 8571 (+)
Type: CAZyme
Location: 7255 - 8571 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Caccovicinus
Species
Caccovicinus sp017889125
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.