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Cluster: HRGMv2_4317_CGC45

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_4317_265 HRGMv2_4317_265_23 20986 21768 + 3.A.1.17.8
TC HRGMv2_4317_265 HRGMv2_4317_265_24 21749 22573 + 3.A.1.17.3
CAZyme HRGMv2_4317_265 HRGMv2_4317_265_25 22638 24575 - GH25
pfam HRGMv2_4317_265 HRGMv2_4317_265_26 24706 27978 - SNF2-rel_dom | Helicase_C | SNF2_assoc | ERCC3_RAD25_C
TF HRGMv2_4317_265 HRGMv2_4317_265_27 28008 28787 - HTH_AraC | HTH_AraC
TC HRGMv2_4317_265 HRGMv2_4317_265_28 28781 30481 - 8.A.59.2.1
TC HRGMv2_4317_265 HRGMv2_4317_265_29 30478 31581 - 3.A.1.20.1
TC HRGMv2_4317_265 HRGMv2_4317_265_30 31688 32764 - 3.A.1.11.8
TC HRGMv2_4317_265 HRGMv2_4317_265_31 32831 34540 - 3.A.1.20.2
TC HRGMv2_4317_265 HRGMv2_4317_265_32 34698 35903 - 3.A.1.20.3
Gene ID: HRGMv2_4317_265_23
Type: TC
Location: 20986 - 21768 (+)
Gene ID: HRGMv2_4317_265_24
Type: TC
Location: 21749 - 22573 (+)
Gene ID: HRGMv2_4317_265_25
Type: CAZyme
Location: 22638 - 24575 (-)
Gene ID: HRGMv2_4317_265_26
Type: pfam
Location: 24706 - 27978 (-)
Gene ID: HRGMv2_4317_265_27
Type: TF
Location: 28008 - 28787 (-)
Gene ID: HRGMv2_4317_265_28
Type: TC
Location: 28781 - 30481 (-)
Gene ID: HRGMv2_4317_265_29
Type: TC
Location: 30478 - 31581 (-)
Gene ID: HRGMv2_4317_265_30
Type: TC
Location: 31688 - 32764 (-)
Gene ID: HRGMv2_4317_265_31
Type: TC
Location: 32831 - 34540 (-)
Gene ID: HRGMv2_4317_265_32
Type: TC
Location: 34698 - 35903 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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