Cluster: HRGMv2_4317_CGC44
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 3
- Substrate:
- Genome ID: HRGMv2_4317
- CGC Family ID: CGCFAM_00458
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_4317_259 | HRGMv2_4317_259_12 | 16200 | 17165 | + | 3.A.1.1.9 |
| TC | HRGMv2_4317_259 | HRGMv2_4317_259_13 | 17181 | 18020 | + | 3.A.1.1.9 |
| CAZyme | HRGMv2_4317_259 | HRGMv2_4317_259_14 | 18142 | 19662 | + | CBM91 | GH43_10 |
| CAZyme | HRGMv2_4317_259 | HRGMv2_4317_259_15 | 19625 | 21487 | + | CBM91 | GH43_12 |
| CAZyme | HRGMv2_4317_259 | HRGMv2_4317_259_16 | 21441 | 22121 | + | CE12 |
Gene ID: HRGMv2_4317_259_12
Type: TC
Location: 16200 - 17165 (+)
Type: TC
Location: 16200 - 17165 (+)
Gene ID: HRGMv2_4317_259_13
Type: TC
Location: 17181 - 18020 (+)
Type: TC
Location: 17181 - 18020 (+)
Gene ID: HRGMv2_4317_259_14
Type: CAZyme
Location: 18142 - 19662 (+)
Type: CAZyme
Location: 18142 - 19662 (+)
Gene ID: HRGMv2_4317_259_15
Type: CAZyme
Location: 19625 - 21487 (+)
Type: CAZyme
Location: 19625 - 21487 (+)
Gene ID: HRGMv2_4317_259_16
Type: CAZyme
Location: 21441 - 22121 (+)
Type: CAZyme
Location: 21441 - 22121 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Caccovicinus
Species
Caccovicinus sp017889125
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.