Cluster: HRGMv2_4317_CGC41
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 3
- Substrate:
- Genome ID: HRGMv2_4317
- CGC Family ID: CGCFAM_00741
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_4317_240 | HRGMv2_4317_240_12 | 10565 | 12022 | - | 2.A.66.2.23 |
| NULL(UNKNOWN) | HRGMv2_4317_240 | HRGMv2_4317_240_13 | 12015 | 12197 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_4317_240 | HRGMv2_4317_240_14 | 12214 | 13176 | - | GT2 |
| CAZyme | HRGMv2_4317_240 | HRGMv2_4317_240_15 | 13199 | 14458 | - | GT2 |
| pfam | HRGMv2_4317_240 | HRGMv2_4317_240_16 | 14650 | 15543 | - | Glycos_transf_2 | Glyco_tranf_2_3 |
| CAZyme | HRGMv2_4317_240 | HRGMv2_4317_240_17 | 15530 | 16582 | - | GT8 |
Gene ID: HRGMv2_4317_240_12
Type: TC
Location: 10565 - 12022 (-)
Type: TC
Location: 10565 - 12022 (-)
Gene ID: HRGMv2_4317_240_13
Type:
Location: 12015 - 12197 (-)
Type:
Location: 12015 - 12197 (-)
Gene ID: HRGMv2_4317_240_14
Type: CAZyme
Location: 12214 - 13176 (-)
Type: CAZyme
Location: 12214 - 13176 (-)
Gene ID: HRGMv2_4317_240_15
Type: CAZyme
Location: 13199 - 14458 (-)
Type: CAZyme
Location: 13199 - 14458 (-)
Gene ID: HRGMv2_4317_240_16
Type: pfam
Location: 14650 - 15543 (-)
Type: pfam
Location: 14650 - 15543 (-)
Gene ID: HRGMv2_4317_240_17
Type: CAZyme
Location: 15530 - 16582 (-)
Type: CAZyme
Location: 15530 - 16582 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Caccovicinus
Species
Caccovicinus sp017889125
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.