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Cluster: HRGMv2_4317_CGC4

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_4317_40 HRGMv2_4317_40_9 9864 11138 - 2.A.1.52.1
TF HRGMv2_4317_40 HRGMv2_4317_40_10 11401 12192 + HTH_DeoR
pfam HRGMv2_4317_40 HRGMv2_4317_40_11 12195 13523 + Phosphodiest
TC HRGMv2_4317_40 HRGMv2_4317_40_12 13520 14635 + 2.A.25.1.9
STP HRGMv2_4317_40 HRGMv2_4317_40_13 14875 16161 + PALP
pfam HRGMv2_4317_40 HRGMv2_4317_40_14 16163 16996 + S6PP | Hydrolase_3
CAZyme HRGMv2_4317_40 HRGMv2_4317_40_15 17452 18954 - GH77
pfam HRGMv2_4317_40 HRGMv2_4317_40_16 18967 19977 - Exo_endo_phos
TC HRGMv2_4317_40 HRGMv2_4317_40_17 19993 22245 - 4.A.1.1.11
TF HRGMv2_4317_40 HRGMv2_4317_40_18 22662 23777 + LacI
TC HRGMv2_4317_40 HRGMv2_4317_40_19 23650 25014 - 2.A.66.1.7
Gene ID: HRGMv2_4317_40_9
Type: TC
Location: 9864 - 11138 (-)
Gene ID: HRGMv2_4317_40_10
Type: TF
Location: 11401 - 12192 (+)
Gene ID: HRGMv2_4317_40_11
Type: pfam
Location: 12195 - 13523 (+)
Gene ID: HRGMv2_4317_40_12
Type: TC
Location: 13520 - 14635 (+)
Gene ID: HRGMv2_4317_40_13
Type: STP
Location: 14875 - 16161 (+)
Gene ID: HRGMv2_4317_40_14
Type: pfam
Location: 16163 - 16996 (+)
Gene ID: HRGMv2_4317_40_15
Type: CAZyme
Location: 17452 - 18954 (-)
Gene ID: HRGMv2_4317_40_16
Type: pfam
Location: 18967 - 19977 (-)
Gene ID: HRGMv2_4317_40_17
Type: TC
Location: 19993 - 22245 (-)
Gene ID: HRGMv2_4317_40_18
Type: TF
Location: 22662 - 23777 (+)
Gene ID: HRGMv2_4317_40_19
Type: TC
Location: 23650 - 25014 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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