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Cluster: HRGMv2_4317_CGC39

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_4317_234 HRGMv2_4317_234_18 20292 22202 + 2.A.16.2.2
CAZyme HRGMv2_4317_234 HRGMv2_4317_234_19 22302 24536 + GH36
TF HRGMv2_4317_234 HRGMv2_4317_234_20 24543 25658 + LacI
TF HRGMv2_4317_234 HRGMv2_4317_234_21 25646 26644 + LacI
TC HRGMv2_4317_234 HRGMv2_4317_234_22 26936 28324 + 3.A.1.1.33
pfam HRGMv2_4317_234 HRGMv2_4317_234_23 28440 29489 + BPD_transp_1
TC HRGMv2_4317_234 HRGMv2_4317_234_24 29489 30331 + 3.A.1.1.34
CAZyme HRGMv2_4317_234 HRGMv2_4317_234_25 30377 31402 + GH130_2
Gene ID: HRGMv2_4317_234_18
Type: TC
Location: 20292 - 22202 (+)
Gene ID: HRGMv2_4317_234_19
Type: CAZyme
Location: 22302 - 24536 (+)
Gene ID: HRGMv2_4317_234_20
Type: TF
Location: 24543 - 25658 (+)
Gene ID: HRGMv2_4317_234_21
Type: TF
Location: 25646 - 26644 (+)
Gene ID: HRGMv2_4317_234_22
Type: TC
Location: 26936 - 28324 (+)
Gene ID: HRGMv2_4317_234_23
Type: pfam
Location: 28440 - 29489 (+)
Gene ID: HRGMv2_4317_234_24
Type: TC
Location: 29489 - 30331 (+)
Gene ID: HRGMv2_4317_234_25
Type: CAZyme
Location: 30377 - 31402 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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