Cluster: HRGMv2_4317_CGC36
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_4317
- CGC Family ID: CGCFAM_00335
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_4317_224 | HRGMv2_4317_224_3 | 2414 | 3859 | + | 3.A.1.1.27 |
| TC | HRGMv2_4317_224 | HRGMv2_4317_224_4 | 3859 | 4701 | + | 3.A.1.1.27 |
| CAZyme | HRGMv2_4317_224 | HRGMv2_4317_224_5 | 4718 | 5821 | + | GH53 |
| NULL(UNKNOWN) | HRGMv2_4317_224 | HRGMv2_4317_224_6 | 5887 | 7740 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| NULL(UNKNOWN) | HRGMv2_4317_224 | HRGMv2_4317_224_7 | 7713 | 7934 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_4317_224 | HRGMv2_4317_224_8 | 7960 | 10032 | + | GH42 |
Gene ID: HRGMv2_4317_224_3
Type: TC
Location: 2414 - 3859 (+)
Type: TC
Location: 2414 - 3859 (+)
Gene ID: HRGMv2_4317_224_4
Type: TC
Location: 3859 - 4701 (+)
Type: TC
Location: 3859 - 4701 (+)
Gene ID: HRGMv2_4317_224_5
Type: CAZyme
Location: 4718 - 5821 (+)
Type: CAZyme
Location: 4718 - 5821 (+)
Gene ID: HRGMv2_4317_224_6
Type:
Location: 5887 - 7740 (+)
Type:
Location: 5887 - 7740 (+)
Gene ID: HRGMv2_4317_224_7
Type:
Location: 7713 - 7934 (+)
Type:
Location: 7713 - 7934 (+)
Gene ID: HRGMv2_4317_224_8
Type: CAZyme
Location: 7960 - 10032 (+)
Type: CAZyme
Location: 7960 - 10032 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Caccovicinus
Species
Caccovicinus sp017889125
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.