Cluster: HRGMv2_4317_CGC3
🧬 Cluster Details
- Gene Count: 3
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_4317
- CGC Family ID: CGCFAM_00775
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_4317_29 | HRGMv2_4317_29_17 | 15759 | 17615 | + | GH13_21 |
| pfam | HRGMv2_4317_29 | HRGMv2_4317_29_18 | 17658 | 18077 | + | UPF0122 |
| TC | HRGMv2_4317_29 | HRGMv2_4317_29_19 | 18095 | 19462 | + | 3.A.5.1.1 |
Gene ID: HRGMv2_4317_29_17
Type: CAZyme
Location: 15759 - 17615 (+)
Type: CAZyme
Location: 15759 - 17615 (+)
Gene ID: HRGMv2_4317_29_18
Type: pfam
Location: 17658 - 18077 (+)
Type: pfam
Location: 17658 - 18077 (+)
Gene ID: HRGMv2_4317_29_19
Type: TC
Location: 18095 - 19462 (+)
Type: TC
Location: 18095 - 19462 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Caccovicinus
Species
Caccovicinus sp017889125
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.