Cluster: HRGMv2_4317_CGC25
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_4317
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_4317_166 | HRGMv2_4317_166_13 | 9535 | 12012 | - | 3.A.3.2.21 |
| pfam | HRGMv2_4317_166 | HRGMv2_4317_166_14 | 12343 | 12822 | + | LuxS |
| pfam | HRGMv2_4317_166 | HRGMv2_4317_166_15 | 12930 | 13850 | - | XdhC_CoxI | XdhC_C |
| CAZyme | HRGMv2_4317_166 | HRGMv2_4317_166_16 | 13847 | 15904 | - | GH13_11 |
| TC | HRGMv2_4317_166 | HRGMv2_4317_166_17 | 15910 | 17814 | - | 3.A.1.120.6 |
Gene ID: HRGMv2_4317_166_13
Type: TC
Location: 9535 - 12012 (-)
Type: TC
Location: 9535 - 12012 (-)
Gene ID: HRGMv2_4317_166_14
Type: pfam
Location: 12343 - 12822 (+)
Type: pfam
Location: 12343 - 12822 (+)
Gene ID: HRGMv2_4317_166_15
Type: pfam
Location: 12930 - 13850 (-)
Type: pfam
Location: 12930 - 13850 (-)
Gene ID: HRGMv2_4317_166_16
Type: CAZyme
Location: 13847 - 15904 (-)
Type: CAZyme
Location: 13847 - 15904 (-)
Gene ID: HRGMv2_4317_166_17
Type: TC
Location: 15910 - 17814 (-)
Type: TC
Location: 15910 - 17814 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Caccovicinus
Species
Caccovicinus sp017889125
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.