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Cluster: HRGMv2_4317_CGC24

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_4317_161 HRGMv2_4317_161_7 8837 13918 - GH28
TF HRGMv2_4317_161 HRGMv2_4317_161_8 14600 15304 + GntR
TC HRGMv2_4317_161 HRGMv2_4317_161_9 15335 15766 + 4.A.6.1.10
TC HRGMv2_4317_161 HRGMv2_4317_161_10 15790 16581 + 4.A.6.1.13
TC HRGMv2_4317_161 HRGMv2_4317_161_11 16574 17374 + 4.A.6.1.13
TC HRGMv2_4317_161 HRGMv2_4317_161_12 17394 17870 + 4.A.6.1.13
CAZyme HRGMv2_4317_161 HRGMv2_4317_161_13 17981 19105 + GH88
CAZyme HRGMv2_4317_161 HRGMv2_4317_161_14 19130 20899 + GH35
Gene ID: HRGMv2_4317_161_7
Type: CAZyme
Location: 8837 - 13918 (-)
Gene ID: HRGMv2_4317_161_8
Type: TF
Location: 14600 - 15304 (+)
Gene ID: HRGMv2_4317_161_9
Type: TC
Location: 15335 - 15766 (+)
Gene ID: HRGMv2_4317_161_10
Type: TC
Location: 15790 - 16581 (+)
Gene ID: HRGMv2_4317_161_11
Type: TC
Location: 16574 - 17374 (+)
Gene ID: HRGMv2_4317_161_12
Type: TC
Location: 17394 - 17870 (+)
Gene ID: HRGMv2_4317_161_13
Type: CAZyme
Location: 17981 - 19105 (+)
Gene ID: HRGMv2_4317_161_14
Type: CAZyme
Location: 19130 - 20899 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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