Cluster: HRGMv2_4317_CGC23
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_4317
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_4317_142 | HRGMv2_4317_142_2 | 785 | 2203 | + | 9.B.18.1.2 |
| NULL(UNKNOWN) | HRGMv2_4317_142 | HRGMv2_4317_142_3 | 2269 | 3657 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TF | HRGMv2_4317_142 | HRGMv2_4317_142_4 | 4098 | 6002 | + | HTH_8 |
| TC | HRGMv2_4317_142 | HRGMv2_4317_142_5 | 6309 | 7241 | + | 3.A.1.1.7 |
| TC | HRGMv2_4317_142 | HRGMv2_4317_142_6 | 7241 | 8083 | + | 3.A.1.1.44 |
| STP | HRGMv2_4317_142 | HRGMv2_4317_142_7 | 8121 | 9509 | + | SBP_bac_1 |
| CAZyme | HRGMv2_4317_142 | HRGMv2_4317_142_8 | 9524 | 10639 | + | GH105 |
Gene ID: HRGMv2_4317_142_2
Type: TC
Location: 785 - 2203 (+)
Type: TC
Location: 785 - 2203 (+)
Gene ID: HRGMv2_4317_142_3
Type:
Location: 2269 - 3657 (+)
Type:
Location: 2269 - 3657 (+)
Gene ID: HRGMv2_4317_142_4
Type: TF
Location: 4098 - 6002 (+)
Type: TF
Location: 4098 - 6002 (+)
Gene ID: HRGMv2_4317_142_5
Type: TC
Location: 6309 - 7241 (+)
Type: TC
Location: 6309 - 7241 (+)
Gene ID: HRGMv2_4317_142_6
Type: TC
Location: 7241 - 8083 (+)
Type: TC
Location: 7241 - 8083 (+)
Gene ID: HRGMv2_4317_142_7
Type: STP
Location: 8121 - 9509 (+)
Type: STP
Location: 8121 - 9509 (+)
Gene ID: HRGMv2_4317_142_8
Type: CAZyme
Location: 9524 - 10639 (+)
Type: CAZyme
Location: 9524 - 10639 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Caccovicinus
Species
Caccovicinus sp017889125
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.