Cluster: HRGMv2_4317_CGC11
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_4317
- CGC Family ID: CGCFAM_00869
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_4317_90 | HRGMv2_4317_90_1 | 2 | 601 | + | 3.A.1.1.11 |
| TC | HRGMv2_4317_90 | HRGMv2_4317_90_2 | 615 | 1466 | + | 3.A.1.1.11 |
| CAZyme | HRGMv2_4317_90 | HRGMv2_4317_90_3 | 1504 | 4584 | + | GH38 |
| TC | HRGMv2_4317_90 | HRGMv2_4317_90_4 | 4603 | 5946 | + | 3.A.1.1.11 |
| TC | HRGMv2_4317_90 | HRGMv2_4317_90_5 | 6026 | 7804 | + | 8.A.59.2.1 |
Gene ID: HRGMv2_4317_90_1
Type: TC
Location: 2 - 601 (+)
Type: TC
Location: 2 - 601 (+)
Gene ID: HRGMv2_4317_90_2
Type: TC
Location: 615 - 1466 (+)
Type: TC
Location: 615 - 1466 (+)
Gene ID: HRGMv2_4317_90_3
Type: CAZyme
Location: 1504 - 4584 (+)
Type: CAZyme
Location: 1504 - 4584 (+)
Gene ID: HRGMv2_4317_90_4
Type: TC
Location: 4603 - 5946 (+)
Type: TC
Location: 4603 - 5946 (+)
Gene ID: HRGMv2_4317_90_5
Type: TC
Location: 6026 - 7804 (+)
Type: TC
Location: 6026 - 7804 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Caccovicinus
Species
Caccovicinus sp017889125
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.