Cluster: HRGMv2_4317_CGC10
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_4317
- CGC Family ID: CGCFAM_04546
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_4317_85 | HRGMv2_4317_85_1 | 1 | 834 | + | 3.A.1.1.11 |
| TC | HRGMv2_4317_85 | HRGMv2_4317_85_2 | 846 | 1676 | + | 3.A.1.1.36 |
| CAZyme | HRGMv2_4317_85 | HRGMv2_4317_85_3 | 1715 | 3985 | + | GH36 |
| STP | HRGMv2_4317_85 | HRGMv2_4317_85_4 | 4233 | 5540 | + | SBP_bac_1 |
| TC | HRGMv2_4317_85 | HRGMv2_4317_85_5 | 5611 | 6525 | + | 3.A.1.1.36 |
| TC | HRGMv2_4317_85 | HRGMv2_4317_85_6 | 6515 | 7360 | + | 3.A.1.1.34 |
Gene ID: HRGMv2_4317_85_1
Type: TC
Location: 1 - 834 (+)
Type: TC
Location: 1 - 834 (+)
Gene ID: HRGMv2_4317_85_2
Type: TC
Location: 846 - 1676 (+)
Type: TC
Location: 846 - 1676 (+)
Gene ID: HRGMv2_4317_85_3
Type: CAZyme
Location: 1715 - 3985 (+)
Type: CAZyme
Location: 1715 - 3985 (+)
Gene ID: HRGMv2_4317_85_4
Type: STP
Location: 4233 - 5540 (+)
Type: STP
Location: 4233 - 5540 (+)
Gene ID: HRGMv2_4317_85_5
Type: TC
Location: 5611 - 6525 (+)
Type: TC
Location: 5611 - 6525 (+)
Gene ID: HRGMv2_4317_85_6
Type: TC
Location: 6515 - 7360 (+)
Type: TC
Location: 6515 - 7360 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Caccovicinus
Species
Caccovicinus sp017889125
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.