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Cluster: HRGMv2_4314_CGC10

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_4314_4 HRGMv2_4314_4_6 7485 10211 + GH94
CAZyme HRGMv2_4314_4 HRGMv2_4314_4_7 10239 13412 + GH161
CAZyme HRGMv2_4314_4 HRGMv2_4314_4_8 13413 14753 + GH30_1
pfam HRGMv2_4314_4 HRGMv2_4314_4_9 14834 15433 + SurA_N_2
TC HRGMv2_4314_4 HRGMv2_4314_4_10 15738 16700 + 3.A.1.1.29
TC HRGMv2_4314_4 HRGMv2_4314_4_11 16711 17610 + 3.A.1.1.29
NULL(UNKNOWN) HRGMv2_4314_4 HRGMv2_4314_4_12 17640 19334 + NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_4314_4 HRGMv2_4314_4_13 19456 21609 + 1.B.52.2.1
TC HRGMv2_4314_4 HRGMv2_4314_4_14 21735 23528 + 8.A.59.2.1
Gene ID: HRGMv2_4314_4_6
Type: CAZyme
Location: 7485 - 10211 (+)
Gene ID: HRGMv2_4314_4_7
Type: CAZyme
Location: 10239 - 13412 (+)
Gene ID: HRGMv2_4314_4_8
Type: CAZyme
Location: 13413 - 14753 (+)
Gene ID: HRGMv2_4314_4_9
Type: pfam
Location: 14834 - 15433 (+)
Gene ID: HRGMv2_4314_4_10
Type: TC
Location: 15738 - 16700 (+)
Gene ID: HRGMv2_4314_4_11
Type: TC
Location: 16711 - 17610 (+)
Gene ID: HRGMv2_4314_4_12
Type:
Location: 17640 - 19334 (+)
Gene ID: HRGMv2_4314_4_13
Type: TC
Location: 19456 - 21609 (+)
Gene ID: HRGMv2_4314_4_14
Type: TC
Location: 21735 - 23528 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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