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Cluster: HRGMv2_4312_CGC18

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_4312_37 HRGMv2_4312_37_4 4189 5220 + GT2
pfam HRGMv2_4312_37 HRGMv2_4312_37_5 5240 6061 + LicD
CAZyme HRGMv2_4312_37 HRGMv2_4312_37_6 6092 6784 + GT2
pfam HRGMv2_4312_37 HRGMv2_4312_37_7 6787 7155 + DUF2304
pfam HRGMv2_4312_37 HRGMv2_4312_37_8 7174 9183 + DUF2142
CAZyme HRGMv2_4312_37 HRGMv2_4312_37_9 9205 11652 + GT2 | GT2
TC HRGMv2_4312_37 HRGMv2_4312_37_10 11683 12459 + 3.A.1.103.6
TC HRGMv2_4312_37 HRGMv2_4312_37_11 12473 13207 + 3.A.1.103.5
NULL(UNKNOWN) HRGMv2_4312_37 HRGMv2_4312_37_12 13231 13800 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_4312_37 HRGMv2_4312_37_13 13829 16168 + GT2
TF HRGMv2_4312_37 HRGMv2_4312_37_14 16375 17514 + MerR
CAZyme HRGMv2_4312_37 HRGMv2_4312_37_15 17602 18834 + GT2
Gene ID: HRGMv2_4312_37_4
Type: CAZyme
Location: 4189 - 5220 (+)
Gene ID: HRGMv2_4312_37_5
Type: pfam
Location: 5240 - 6061 (+)
Gene ID: HRGMv2_4312_37_6
Type: CAZyme
Location: 6092 - 6784 (+)
Gene ID: HRGMv2_4312_37_7
Type: pfam
Location: 6787 - 7155 (+)
Gene ID: HRGMv2_4312_37_8
Type: pfam
Location: 7174 - 9183 (+)
Gene ID: HRGMv2_4312_37_9
Type: CAZyme
Location: 9205 - 11652 (+)
Gene ID: HRGMv2_4312_37_10
Type: TC
Location: 11683 - 12459 (+)
Gene ID: HRGMv2_4312_37_11
Type: TC
Location: 12473 - 13207 (+)
Gene ID: HRGMv2_4312_37_12
Type:
Location: 13231 - 13800 (+)
Gene ID: HRGMv2_4312_37_13
Type: CAZyme
Location: 13829 - 16168 (+)
Gene ID: HRGMv2_4312_37_14
Type: TF
Location: 16375 - 17514 (+)
Gene ID: HRGMv2_4312_37_15
Type: CAZyme
Location: 17602 - 18834 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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