Cluster: HRGMv2_4310_CGC9
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_4310
- CGC Family ID: CGCFAM_01684
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_4310_18 | HRGMv2_4310_18_18 | 18990 | 20798 | + | 3.A.1.120.6 |
| CAZyme | HRGMv2_4310_18 | HRGMv2_4310_18_19 | 20807 | 22747 | + | GH13_11 |
| pfam | HRGMv2_4310_18 | HRGMv2_4310_18_20 | 22810 | 23289 | - | LuxS |
| TC | HRGMv2_4310_18 | HRGMv2_4310_18_21 | 23692 | 25140 | + | 3.A.3.2.21 |
| TC | HRGMv2_4310_18 | HRGMv2_4310_18_22 | 25137 | 26414 | + | 3.A.3.2.28 |
Gene ID: HRGMv2_4310_18_18
Type: TC
Location: 18990 - 20798 (+)
Type: TC
Location: 18990 - 20798 (+)
Gene ID: HRGMv2_4310_18_19
Type: CAZyme
Location: 20807 - 22747 (+)
Type: CAZyme
Location: 20807 - 22747 (+)
Gene ID: HRGMv2_4310_18_20
Type: pfam
Location: 22810 - 23289 (-)
Type: pfam
Location: 22810 - 23289 (-)
Gene ID: HRGMv2_4310_18_21
Type: TC
Location: 23692 - 25140 (+)
Type: TC
Location: 23692 - 25140 (+)
Gene ID: HRGMv2_4310_18_22
Type: TC
Location: 25137 - 26414 (+)
Type: TC
Location: 25137 - 26414 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Lachnoclostridium_A
Species
Lachnoclostridium_A avicola
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.