Cluster: HRGMv2_4310_CGC8
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_4310
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_4310_17 | HRGMv2_4310_17_30 | 29888 | 30817 | - | 2.A.69.4.2 |
| TF | HRGMv2_4310_17 | HRGMv2_4310_17_31 | 30925 | 32709 | + | HTH_11 | Mga |
| CAZyme | HRGMv2_4310_17 | HRGMv2_4310_17_32 | 32841 | 34331 | + | GH1 |
| pfam | HRGMv2_4310_17 | HRGMv2_4310_17_33 | 34456 | 35181 | - | ABC2_membrane_4 |
| pfam | HRGMv2_4310_17 | HRGMv2_4310_17_34 | 35194 | 35943 | - | ABC2_membrane_4 |
| TC | HRGMv2_4310_17 | HRGMv2_4310_17_35 | 35943 | 36905 | - | 3.A.1.124.3 |
Gene ID: HRGMv2_4310_17_30
Type: TC
Location: 29888 - 30817 (-)
Type: TC
Location: 29888 - 30817 (-)
Gene ID: HRGMv2_4310_17_31
Type: TF
Location: 30925 - 32709 (+)
Type: TF
Location: 30925 - 32709 (+)
Gene ID: HRGMv2_4310_17_32
Type: CAZyme
Location: 32841 - 34331 (+)
Type: CAZyme
Location: 32841 - 34331 (+)
Gene ID: HRGMv2_4310_17_33
Type: pfam
Location: 34456 - 35181 (-)
Type: pfam
Location: 34456 - 35181 (-)
Gene ID: HRGMv2_4310_17_34
Type: pfam
Location: 35194 - 35943 (-)
Type: pfam
Location: 35194 - 35943 (-)
Gene ID: HRGMv2_4310_17_35
Type: TC
Location: 35943 - 36905 (-)
Type: TC
Location: 35943 - 36905 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Lachnoclostridium_A
Species
Lachnoclostridium_A avicola
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.