Cluster: HRGMv2_4310_CGC6
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_4310
- CGC Family ID: CGCFAM_00027
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_4310_14 | HRGMv2_4310_14_31 | 31781 | 33250 | - | GH1 |
| TC | HRGMv2_4310_14 | HRGMv2_4310_14_32 | 33255 | 35201 | - | 4.A.1.2.11 |
| pfam | HRGMv2_4310_14 | HRGMv2_4310_14_33 | 35456 | 36295 | - | DegV |
| TC | HRGMv2_4310_14 | HRGMv2_4310_14_34 | 36430 | 37608 | - | 3.A.1.122.2 |
| TC | HRGMv2_4310_14 | HRGMv2_4310_14_35 | 37592 | 38299 | - | 3.A.1.122.2 |
Gene ID: HRGMv2_4310_14_31
Type: CAZyme
Location: 31781 - 33250 (-)
Type: CAZyme
Location: 31781 - 33250 (-)
Gene ID: HRGMv2_4310_14_32
Type: TC
Location: 33255 - 35201 (-)
Type: TC
Location: 33255 - 35201 (-)
Gene ID: HRGMv2_4310_14_33
Type: pfam
Location: 35456 - 36295 (-)
Type: pfam
Location: 35456 - 36295 (-)
Gene ID: HRGMv2_4310_14_34
Type: TC
Location: 36430 - 37608 (-)
Type: TC
Location: 36430 - 37608 (-)
Gene ID: HRGMv2_4310_14_35
Type: TC
Location: 37592 - 38299 (-)
Type: TC
Location: 37592 - 38299 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Lachnoclostridium_A
Species
Lachnoclostridium_A avicola
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.