Cluster: HRGMv2_4310_CGC3
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_4310
- CGC Family ID: CGCFAM_00008
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_4310_5 | HRGMv2_4310_5_7 | 4961 | 5746 | - | GT2 |
| CAZyme | HRGMv2_4310_5 | HRGMv2_4310_5_8 | 5775 | 8885 | - | GT2 |
| pfam | HRGMv2_4310_5 | HRGMv2_4310_5_9 | 8878 | 9648 | - | Methyltransf_11 |
| TC | HRGMv2_4310_5 | HRGMv2_4310_5_10 | 9649 | 10989 | - | 3.A.1.103.6 |
Gene ID: HRGMv2_4310_5_7
Type: CAZyme
Location: 4961 - 5746 (-)
Type: CAZyme
Location: 4961 - 5746 (-)
Gene ID: HRGMv2_4310_5_8
Type: CAZyme
Location: 5775 - 8885 (-)
Type: CAZyme
Location: 5775 - 8885 (-)
Gene ID: HRGMv2_4310_5_9
Type: pfam
Location: 8878 - 9648 (-)
Type: pfam
Location: 8878 - 9648 (-)
Gene ID: HRGMv2_4310_5_10
Type: TC
Location: 9649 - 10989 (-)
Type: TC
Location: 9649 - 10989 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Lachnoclostridium_A
Species
Lachnoclostridium_A avicola
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_4310_5_10 | vegan > vegetarian | 2.27110 | 0.03278 |