Cluster: HRGMv2_4310_CGC21
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_4310
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_4310_60 | HRGMv2_4310_60_7 | 6082 | 7998 | - | 3.A.1.121.4 |
| TF | HRGMv2_4310_60 | HRGMv2_4310_60_8 | 8132 | 9106 | - | HTH_5 |
| STP | HRGMv2_4310_60 | HRGMv2_4310_60_9 | 9319 | 10356 | + | Peripla_BP_1 |
| TC | HRGMv2_4310_60 | HRGMv2_4310_60_10 | 10448 | 11971 | + | 3.A.1.2.14 |
| TC | HRGMv2_4310_60 | HRGMv2_4310_60_11 | 11988 | 12923 | + | 3.A.1.2.25 |
| TC | HRGMv2_4310_60 | HRGMv2_4310_60_12 | 12938 | 13930 | + | 3.A.1.2.1 |
| CAZyme | HRGMv2_4310_60 | HRGMv2_4310_60_13 | 13954 | 15726 | + | GH2 |
Gene ID: HRGMv2_4310_60_7
Type: TC
Location: 6082 - 7998 (-)
Type: TC
Location: 6082 - 7998 (-)
Gene ID: HRGMv2_4310_60_8
Type: TF
Location: 8132 - 9106 (-)
Type: TF
Location: 8132 - 9106 (-)
Gene ID: HRGMv2_4310_60_9
Type: STP
Location: 9319 - 10356 (+)
Type: STP
Location: 9319 - 10356 (+)
Gene ID: HRGMv2_4310_60_10
Type: TC
Location: 10448 - 11971 (+)
Type: TC
Location: 10448 - 11971 (+)
Gene ID: HRGMv2_4310_60_11
Type: TC
Location: 11988 - 12923 (+)
Type: TC
Location: 11988 - 12923 (+)
Gene ID: HRGMv2_4310_60_12
Type: TC
Location: 12938 - 13930 (+)
Type: TC
Location: 12938 - 13930 (+)
Gene ID: HRGMv2_4310_60_13
Type: CAZyme
Location: 13954 - 15726 (+)
Type: CAZyme
Location: 13954 - 15726 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Lachnoclostridium_A
Species
Lachnoclostridium_A avicola
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.