Cluster: HRGMv2_4310_CGC20
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_4310
- CGC Family ID: CGCFAM_04932
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_4310_56 | HRGMv2_4310_56_11 | 9759 | 10493 | + | 9.B.158.1.1 |
| pfam | HRGMv2_4310_56 | HRGMv2_4310_56_12 | 10490 | 11350 | + | YitT_membrane | DUF2179 |
| CAZyme | HRGMv2_4310_56 | HRGMv2_4310_56_13 | 11375 | 12466 | + | GH170 |
| TC | HRGMv2_4310_56 | HRGMv2_4310_56_14 | 12577 | 13416 | - | 8.A.5.1.4 |
Gene ID: HRGMv2_4310_56_11
Type: TC
Location: 9759 - 10493 (+)
Type: TC
Location: 9759 - 10493 (+)
Gene ID: HRGMv2_4310_56_12
Type: pfam
Location: 10490 - 11350 (+)
Type: pfam
Location: 10490 - 11350 (+)
Gene ID: HRGMv2_4310_56_13
Type: CAZyme
Location: 11375 - 12466 (+)
Type: CAZyme
Location: 11375 - 12466 (+)
Gene ID: HRGMv2_4310_56_14
Type: TC
Location: 12577 - 13416 (-)
Type: TC
Location: 12577 - 13416 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Lachnoclostridium_A
Species
Lachnoclostridium_A avicola
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.