Cluster: HRGMv2_4310_CGC17
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_4310
- CGC Family ID: CGCFAM_00190
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_4310_40 | HRGMv2_4310_40_1 | 2 | 706 | + | 3.A.1.2.17 |
| TC | HRGMv2_4310_40 | HRGMv2_4310_40_2 | 699 | 1790 | + | 3.A.1.2.12 |
| TC | HRGMv2_4310_40 | HRGMv2_4310_40_3 | 1787 | 2692 | + | 3.A.1.2.12 |
| pfam | HRGMv2_4310_40 | HRGMv2_4310_40_4 | 2689 | 3438 | + | PNP_UDP_1 |
| CAZyme | HRGMv2_4310_40 | HRGMv2_4310_40_5 | 3543 | 4526 | + | CE4 |
Gene ID: HRGMv2_4310_40_1
Type: TC
Location: 2 - 706 (+)
Type: TC
Location: 2 - 706 (+)
Gene ID: HRGMv2_4310_40_2
Type: TC
Location: 699 - 1790 (+)
Type: TC
Location: 699 - 1790 (+)
Gene ID: HRGMv2_4310_40_3
Type: TC
Location: 1787 - 2692 (+)
Type: TC
Location: 1787 - 2692 (+)
Gene ID: HRGMv2_4310_40_4
Type: pfam
Location: 2689 - 3438 (+)
Type: pfam
Location: 2689 - 3438 (+)
Gene ID: HRGMv2_4310_40_5
Type: CAZyme
Location: 3543 - 4526 (+)
Type: CAZyme
Location: 3543 - 4526 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Lachnoclostridium_A
Species
Lachnoclostridium_A avicola
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.