Cluster: HRGMv2_4310_CGC15
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate: alpha-glucan
- Genome ID: HRGMv2_4310
- CGC Family ID: CGCFAM_00160
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_4310_36 | HRGMv2_4310_36_12 | 13298 | 14950 | - | GH13_29 |
| TC | HRGMv2_4310_36 | HRGMv2_4310_36_13 | 14995 | 17007 | - | 4.A.1.2.13 |
| TF | HRGMv2_4310_36 | HRGMv2_4310_36_14 | 17161 | 17895 | + | GntR |
| STP | HRGMv2_4310_36 | HRGMv2_4310_36_15 | 17994 | 18581 | - | HD |
| TC | HRGMv2_4310_36 | HRGMv2_4310_36_16 | 18619 | 19326 | - | 9.B.20.1.4 |
| TC | HRGMv2_4310_36 | HRGMv2_4310_36_17 | 19556 | 21268 | + | 8.A.59.2.1 |
Gene ID: HRGMv2_4310_36_12
Type: CAZyme
Location: 13298 - 14950 (-)
Type: CAZyme
Location: 13298 - 14950 (-)
Gene ID: HRGMv2_4310_36_13
Type: TC
Location: 14995 - 17007 (-)
Type: TC
Location: 14995 - 17007 (-)
Gene ID: HRGMv2_4310_36_14
Type: TF
Location: 17161 - 17895 (+)
Type: TF
Location: 17161 - 17895 (+)
Gene ID: HRGMv2_4310_36_15
Type: STP
Location: 17994 - 18581 (-)
Type: STP
Location: 17994 - 18581 (-)
Gene ID: HRGMv2_4310_36_16
Type: TC
Location: 18619 - 19326 (-)
Type: TC
Location: 18619 - 19326 (-)
Gene ID: HRGMv2_4310_36_17
Type: TC
Location: 19556 - 21268 (+)
Type: TC
Location: 19556 - 21268 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Lachnoclostridium_A
Species
Lachnoclostridium_A avicola
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.