Cluster: HRGMv2_4310_CGC1
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_4310
- CGC Family ID: CGCFAM_00149
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_4310_2 | HRGMv2_4310_2_5 | 3023 | 3661 | + | 9.B.104.1.3 |
| pfam | HRGMv2_4310_2 | HRGMv2_4310_2_6 | 3648 | 4064 | + | HIT | DcpS_C |
| STP | HRGMv2_4310_2 | HRGMv2_4310_2_7 | 4081 | 4647 | + | Sigma70_r2 | Sigma70_r4_2 |
| CAZyme | HRGMv2_4310_2 | HRGMv2_4310_2_8 | 4632 | 5699 | - | GT28 |
| pfam | HRGMv2_4310_2 | HRGMv2_4310_2_9 | 5806 | 6723 | + | DUF4367 |
| CAZyme | HRGMv2_4310_2 | HRGMv2_4310_2_10 | 8787 | 10760 | - | GH25 |
Gene ID: HRGMv2_4310_2_5
Type: TC
Location: 3023 - 3661 (+)
Type: TC
Location: 3023 - 3661 (+)
Gene ID: HRGMv2_4310_2_6
Type: pfam
Location: 3648 - 4064 (+)
Type: pfam
Location: 3648 - 4064 (+)
Gene ID: HRGMv2_4310_2_7
Type: STP
Location: 4081 - 4647 (+)
Type: STP
Location: 4081 - 4647 (+)
Gene ID: HRGMv2_4310_2_8
Type: CAZyme
Location: 4632 - 5699 (-)
Type: CAZyme
Location: 4632 - 5699 (-)
Gene ID: HRGMv2_4310_2_9
Type: pfam
Location: 5806 - 6723 (+)
Type: pfam
Location: 5806 - 6723 (+)
Gene ID: HRGMv2_4310_2_10
Type: CAZyme
Location: 8787 - 10760 (-)
Type: CAZyme
Location: 8787 - 10760 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Lachnoclostridium_A
Species
Lachnoclostridium_A avicola
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.