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Cluster: HRGMv2_4309_CGC5

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_4309_2 HRGMv2_4309_2_6 5288 6340 - 3.A.1.2.9
TC HRGMv2_4309_2 HRGMv2_4309_2_7 6532 7398 - 3.A.1.1.3
TC HRGMv2_4309_2 HRGMv2_4309_2_8 7405 8316 - 3.A.1.1.4
NULL(UNKNOWN) HRGMv2_4309_2 HRGMv2_4309_2_9 8441 9772 - NULL(UNKNOWN)
[View Structural Homologs]
TF HRGMv2_4309_2 HRGMv2_4309_2_10 9814 10842 - LacI
CAZyme HRGMv2_4309_2 HRGMv2_4309_2_11 11163 13607 + GH94
pfam HRGMv2_4309_2 HRGMv2_4309_2_12 13695 14384 - RNase_H | Cauli_VI | RVT_3
peptidase HRGMv2_4309_2 HRGMv2_4309_2_13 14396 15571 - S12.UPW
CAZyme HRGMv2_4309_2 HRGMv2_4309_2_14 15595 17292 - CBM91 | GH43_12
CAZyme HRGMv2_4309_2 HRGMv2_4309_2_15 17432 19525 - GH3
TC HRGMv2_4309_2 HRGMv2_4309_2_16 19571 20425 - 3.A.1.1.18
TC HRGMv2_4309_2 HRGMv2_4309_2_17 20440 21327 - 3.A.1.1.4
Gene ID: HRGMv2_4309_2_6
Type: TC
Location: 5288 - 6340 (-)
Gene ID: HRGMv2_4309_2_7
Type: TC
Location: 6532 - 7398 (-)
Gene ID: HRGMv2_4309_2_8
Type: TC
Location: 7405 - 8316 (-)
Gene ID: HRGMv2_4309_2_9
Type:
Location: 8441 - 9772 (-)
Gene ID: HRGMv2_4309_2_10
Type: TF
Location: 9814 - 10842 (-)
Gene ID: HRGMv2_4309_2_11
Type: CAZyme
Location: 11163 - 13607 (+)
Gene ID: HRGMv2_4309_2_12
Type: pfam
Location: 13695 - 14384 (-)
Gene ID: HRGMv2_4309_2_13
Type: peptidase
Location: 14396 - 15571 (-)
Gene ID: HRGMv2_4309_2_14
Type: CAZyme
Location: 15595 - 17292 (-)
Gene ID: HRGMv2_4309_2_15
Type: CAZyme
Location: 17432 - 19525 (-)
Gene ID: HRGMv2_4309_2_16
Type: TC
Location: 19571 - 20425 (-)
Gene ID: HRGMv2_4309_2_17
Type: TC
Location: 20440 - 21327 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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