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Cluster: HRGMv2_4308_CGC42

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_4308_92 HRGMv2_4308_92_2 1346 2464 - 2.A.45.2.6
NULL(UNKNOWN) HRGMv2_4308_92 HRGMv2_4308_92_3 2534 3454 - NULL(UNKNOWN)
[View Structural Homologs]
pfam HRGMv2_4308_92 HRGMv2_4308_92_4 3656 4507 - MatE
TC HRGMv2_4308_92 HRGMv2_4308_92_5 4504 5037 - 2.A.66.1.23
TF HRGMv2_4308_92 HRGMv2_4308_92_6 5062 5418 - 0042546
TF HRGMv2_4308_92 HRGMv2_4308_92_7 5396 6310 - HTH_1
CAZyme HRGMv2_4308_92 HRGMv2_4308_92_8 6463 7896 - GH1
TC HRGMv2_4308_92 HRGMv2_4308_92_9 7913 9892 - 4.A.1.2.11
TC HRGMv2_4308_92 HRGMv2_4308_92_10 10049 11053 - 8.A.5.1.6
Gene ID: HRGMv2_4308_92_2
Type: TC
Location: 1346 - 2464 (-)
Gene ID: HRGMv2_4308_92_3
Type:
Location: 2534 - 3454 (-)
Gene ID: HRGMv2_4308_92_4
Type: pfam
Location: 3656 - 4507 (-)
Gene ID: HRGMv2_4308_92_5
Type: TC
Location: 4504 - 5037 (-)
Gene ID: HRGMv2_4308_92_6
Type: TF
Location: 5062 - 5418 (-)
Gene ID: HRGMv2_4308_92_7
Type: TF
Location: 5396 - 6310 (-)
Gene ID: HRGMv2_4308_92_8
Type: CAZyme
Location: 6463 - 7896 (-)
Gene ID: HRGMv2_4308_92_9
Type: TC
Location: 7913 - 9892 (-)
Gene ID: HRGMv2_4308_92_10
Type: TC
Location: 10049 - 11053 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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